31 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC05g01120D	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (537 aa)
	BnaA03g18760D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (715 aa)
	BnaA05g28020D	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (231 aa)
	BnaA03g47140D	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (216 aa)
	BnaC09g39160D	BnaC09g39160D protein. (418 aa)
	BnaA10g07300D	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (404 aa)
	BnaA08g27540D	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (398 aa)
	BnaA07g08220D	Citrate synthase; Belongs to the citrate synthase family. (178 aa)
	BnaC05g01980D	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (400 aa)
	BnaA09g02760D	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (498 aa)
	BnaC09g47630D	BnaC09g47630D protein. (382 aa)
	BnaC04g49560D	Citrate synthase; Belongs to the citrate synthase family. (475 aa)
	BnaA09g35800D	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (227 aa)
	BnaA03g48610D	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (633 aa)
	BnaC01g19630D	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (397 aa)
	BnaA04g25660D	Citrate synthase; Belongs to the citrate synthase family. (475 aa)
	BnaA01g14450D	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (213 aa)
	BnaC02g38230D	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (498 aa)
	BnaA01g31350D	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (180 aa)
	BnaAnng06210D	BnaAnng06210D protein. (380 aa)
	BnaC08g26550D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (727 aa)
	BnaC04g22440D	Citrate synthase; Belongs to the citrate synthase family. (472 aa)
	BnaAnng07910D	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (498 aa)
	BnaC02g01240D	BnaC02g01240D protein. (380 aa)
	BnaA09g55310D	Citrate synthase. (507 aa)
	BnaA09g55280D	Citrate synthase. (470 aa)
	BnaC04g52580D	Citrate synthase. (510 aa)
	BnaC09g54390D	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (508 aa)
	BnaC03g72600D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (715 aa)
	BnaAnng37880D	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (298 aa)
	BnaA06g39660D	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (310 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA03g18760D	BnaA04g25660D	A0A078EZV7	A0A078GVC1	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Citrate synthase; Belongs to the citrate synthase family.	0.520
BnaA03g18760D	BnaA06g39660D	A0A078EZV7	A0A078JYZ4	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.804
BnaA03g18760D	BnaA07g08220D	A0A078EZV7	A0A078FRA5	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Citrate synthase; Belongs to the citrate synthase family.	0.520
BnaA03g18760D	BnaA09g02760D	A0A078EZV7	A0A078G092	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.803
BnaA03g18760D	BnaA09g55280D	A0A078EZV7	A0A078IIQ4	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Citrate synthase.	0.520
BnaA03g18760D	BnaA09g55310D	A0A078EZV7	A0A078IH04	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Citrate synthase.	0.520
BnaA03g18760D	BnaAnng07910D	A0A078EZV7	A0A078I4V0	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.805
BnaA03g18760D	BnaAnng37880D	A0A078EZV7	A0A078JVE4	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.803
BnaA03g18760D	BnaC02g38230D	A0A078EZV7	A0A078HDI3	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.804
BnaA03g18760D	BnaC03g72600D	A0A078EZV7	A0A078JC38	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC04g22440D	A0A078EZV7	A0A078HXR9	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Citrate synthase; Belongs to the citrate synthase family.	0.520
BnaA03g18760D	BnaC04g49560D	A0A078EZV7	A0A078GFM5	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Citrate synthase; Belongs to the citrate synthase family.	0.520
BnaA03g18760D	BnaC04g52580D	A0A078EZV7	A0A078ILE6	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Citrate synthase.	0.520
BnaA03g18760D	BnaC08g26550D	A0A078EZV7	A0A078HWQ9	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC09g47630D	A0A078EZV7	A0A078G803	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	BnaC09g47630D protein.	0.439
BnaA03g48610D	BnaAnng06210D	A0A078GTL5	A0A078HVF5	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	BnaAnng06210D protein.	0.576
BnaA03g48610D	BnaC02g01240D	A0A078GTL5	A0A078I6K0	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	BnaC02g01240D protein.	0.576
BnaA03g48610D	BnaC05g01120D	A0A078GTL5	A0A078FSF5	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.527
BnaA03g48610D	BnaC09g39160D	A0A078GTL5	A0A078FHJ5	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	BnaC09g39160D protein.	0.976
BnaA03g48610D	BnaC09g47630D	A0A078GTL5	A0A078G803	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	BnaC09g47630D protein.	0.663