39 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA07g24640D	BnaA07g24640D protein. (320 aa)
	BnaA02g05340D	BnaA02g05340D protein. (517 aa)
	BnaA09g40400D	BnaA09g40400D protein. (449 aa)
	BnaC09g38810D	BnaC09g38810D protein. (334 aa)
	BnaA02g12860D	BnaA02g12860D protein. (529 aa)
	BnaC02g24920D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (474 aa)
	BnaC04g47740D	BnaC04g47740D protein. (546 aa)
	BnaC09g36710D	BnaC09g36710D protein. (464 aa)
	BnaA01g26240D	BnaA01g26240D protein. (324 aa)
	BnaA09g30670D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (491 aa)
	BnaA09g30700D	BnaA09g30700D protein; Belongs to the UDP-glycosyltransferase family. (290 aa)
	BnaA02g18840D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (474 aa)
	BnaA03g49660D	BnaA03g49660D protein. (516 aa)
	BnaA04g16010D	BnaA04g16010D protein; Belongs to the IPP transferase family. (464 aa)
	BnaC04g08440D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (497 aa)
	BnaA03g19500D	Cytokinin oxidase/dehydrogenase 1-1. (545 aa)
	BnaC05g17420D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (482 aa)
	BnaA08g20880D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (480 aa)
	BnaC02g17200D	BnaC02g17200D protein. (538 aa)
	BnaA02g13860D	BnaA02g13860D protein. (335 aa)
	BnaA02g04650D	BnaA02g04650D protein; Belongs to the IPP transferase family. (220 aa)
	BnaA07g10510D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (458 aa)
	BnaAnng08610D	BnaAnng08610D protein. (331 aa)
	BnaA07g10530D	BnaA07g10530D protein. (491 aa)
	BnaAnng09190D	BnaAnng09190D protein. (531 aa)
	BnaA10g28940D	BnaA10g28940D protein. (478 aa)
	BnaC09g33450D	BnaC09g33450D protein. (478 aa)
	BnaCnng24710D	BnaCnng24710D protein. (235 aa)
	BnaCnng28920D	BnaCnng28920D protein. (74 aa)
	BnaC07g50850D	BnaC07g50850D protein. (516 aa)
	BnaA07g35940D	BnaA07g35940D protein. (768 aa)
	BnaC07g48400D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (488 aa)
	BnaA04g21090D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (478 aa)
	BnaCnng41060D	BnaCnng41060D protein. (518 aa)
	BnaA09g55640D	BnaA09g55640D protein. (332 aa)
	BnaC07g48390D	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (458 aa)
	BnaA09g52930D	BnaA09g52930D protein. (484 aa)
	BnaCnng56440D	BnaCnng56440D protein. (332 aa)
	BnaCnng78130D	BnaCnng78130D protein. (92 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g26240D	BnaA02g05340D	A0A078FZY6	A0A078FB83	BnaA01g26240D protein.	BnaA02g05340D protein.	0.430
BnaA01g26240D	BnaA02g12860D	A0A078FZY6	A0A078FKE7	BnaA01g26240D protein.	BnaA02g12860D protein.	0.940
BnaA01g26240D	BnaA03g19500D	A0A078FZY6	A0A078HAD3	BnaA01g26240D protein.	Cytokinin oxidase/dehydrogenase 1-1.	0.404
BnaA01g26240D	BnaA09g40400D	A0A078FZY6	A0A078FEU5	BnaA01g26240D protein.	BnaA09g40400D protein.	0.467
BnaA01g26240D	BnaAnng09190D	A0A078FZY6	A0A078ICF6	BnaA01g26240D protein.	BnaAnng09190D protein.	0.493
BnaA01g26240D	BnaC02g17200D	A0A078FZY6	A0A078HZY2	BnaA01g26240D protein.	BnaC02g17200D protein.	0.940
BnaA01g26240D	BnaC04g47740D	A0A078FZY6	A0A078FPI3	BnaA01g26240D protein.	BnaC04g47740D protein.	0.404
BnaA01g26240D	BnaC09g36710D	A0A078FZY6	A0A078FUW5	BnaA01g26240D protein.	BnaC09g36710D protein.	0.430
BnaA02g04650D	BnaA02g05340D	A0A078I5E6	A0A078FB83	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaA02g05340D protein.	0.495
BnaA02g04650D	BnaA02g12860D	A0A078I5E6	A0A078FKE7	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaA02g12860D protein.	0.493
BnaA02g04650D	BnaA03g19500D	A0A078I5E6	A0A078HAD3	BnaA02g04650D protein; Belongs to the IPP transferase family.	Cytokinin oxidase/dehydrogenase 1-1.	0.465
BnaA02g04650D	BnaA03g49660D	A0A078I5E6	A0A078GYH6	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaA03g49660D protein.	0.465
BnaA02g04650D	BnaA04g16010D	A0A078I5E6	A0A078GZD0	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaA04g16010D protein; Belongs to the IPP transferase family.	0.933
BnaA02g04650D	BnaA09g40400D	A0A078I5E6	A0A078FEU5	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaA09g40400D protein.	0.465
BnaA02g04650D	BnaA10g28940D	A0A078I5E6	A0A078IKN5	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaA10g28940D protein.	0.407
BnaA02g04650D	BnaAnng09190D	A0A078I5E6	A0A078ICF6	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaAnng09190D protein.	0.499
BnaA02g04650D	BnaC02g17200D	A0A078I5E6	A0A078HZY2	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaC02g17200D protein.	0.493
BnaA02g04650D	BnaC04g47740D	A0A078I5E6	A0A078FPI3	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaC04g47740D protein.	0.465
BnaA02g04650D	BnaC07g50850D	A0A078I5E6	A0A078IYS7	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaC07g50850D protein.	0.465
BnaA02g04650D	BnaC09g33450D	A0A078I5E6	A0A078IPP5	BnaA02g04650D protein; Belongs to the IPP transferase family.	BnaC09g33450D protein.	0.407