Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHF76265.1 | SHG24434.1 | SAMN05443663_10178 | SAMN05443663_102302 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | RNA polymerase Rpb6. | 0.484 |
| SHF76265.1 | SHH52270.1 | SAMN05443663_10178 | SAMN05443663_108108 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Hypothetical protein. | 0.922 |
| SHF76265.1 | secA | SAMN05443663_10178 | SAMN05443663_10776 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.987 |
| SHF76265.1 | secE | SAMN05443663_10178 | SAMN05443663_11254 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.999 |
| SHF76265.1 | secF | SAMN05443663_10178 | SAMN05443663_10695 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secF /protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.999 |
| SHF76265.1 | secY | SAMN05443663_10178 | SAMN05443663_11396 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.999 |
| SHF82490.1 | SHF83617.1 | SAMN05443663_101242 | SAMN05443663_101273 | Type IX secretion system membrane protein, PorP/SprF family. | Type IX secretion system membrane protein, PorP/SprF family. | 0.723 |
| SHF82490.1 | SHG82225.1 | SAMN05443663_101242 | SAMN05443663_10435 | Type IX secretion system membrane protein, PorP/SprF family. | Type IX secretion system membrane protein, PorP/SprF family. | 0.726 |
| SHF82490.1 | SHH17344.1 | SAMN05443663_101242 | SAMN05443663_10613 | Type IX secretion system membrane protein, PorP/SprF family. | Protein involved in gliding motility GldI. | 0.464 |
| SHF83617.1 | SHF82490.1 | SAMN05443663_101273 | SAMN05443663_101242 | Type IX secretion system membrane protein, PorP/SprF family. | Type IX secretion system membrane protein, PorP/SprF family. | 0.723 |
| SHF83953.1 | SHF84494.1 | SAMN05443663_101281 | SAMN05443663_101298 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Thioredoxin 1; Belongs to the thioredoxin family. | 0.473 |
| SHF83953.1 | SHF94411.1 | SAMN05443663_101281 | SAMN05443663_101586 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Thioredoxin; Belongs to the thioredoxin family. | 0.473 |
| SHF83953.1 | SHG25728.1 | SAMN05443663_101281 | SAMN05443663_102347 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Bacillithiol system protein YtxJ. | 0.451 |
| SHF83953.1 | SHG94289.1 | SAMN05443663_101281 | SAMN05443663_104325 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Hypothetical protein. | 0.451 |
| SHF83953.1 | SHH26062.1 | SAMN05443663_101281 | SAMN05443663_106225 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Thioredoxin. | 0.473 |
| SHF83953.1 | ndk | SAMN05443663_101281 | SAMN05443663_107108 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.745 |
| SHF83953.1 | rpoA | SAMN05443663_101281 | SAMN05443663_113102 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.746 |
| SHF83953.1 | rpoB | SAMN05443663_101281 | SAMN05443663_11260 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.705 |
| SHF83953.1 | rpoC | SAMN05443663_101281 | SAMN05443663_11261 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.698 |
| SHF83953.1 | secE | SAMN05443663_101281 | SAMN05443663_11254 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.661 |
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