STRINGSTRING
SNRPB2 SNRPB2 CRNKL1 CRNKL1 SF3B4 SF3B4 AV530_008795 AV530_008795 WBP4 WBP4 PRPF4 PRPF4 ZNF830 ZNF830 CWF19L2 CWF19L2 BUD13 BUD13 LSM8 LSM8 ZCRB1 ZCRB1 WBP11 WBP11 MFAP1 MFAP1 SNRPA1 SNRPA1 DHX15 DHX15 SYF2 SYF2 PPIE PPIE AV530_008430 AV530_008430 SNRNP40 SNRNP40 SNIP1 SNIP1 SF3A3 SF3A3 LSM3 LSM3 SF3B5 SF3B5 CDC40 CDC40 SF3B6 SF3B6 CDC5L CDC5L PRPF19 PRPF19 CCDC12 CCDC12 CWC25 CWC25 DHX8 DHX8 DDX42 DDX42 AV530_010187 AV530_010187 AV530_001418 AV530_001418 SNRPD3 SNRPD3 TFIP11 TFIP11 SF3A1 SF3A1 ZMAT5 ZMAT5 PLRG1 PLRG1 AV530_002636 AV530_002636 SART3 SART3 AV530_017580 AV530_017580 DDX23 DDX23 PPIL3 PPIL3 PRPF38A PRPF38A RNPC3 RNPC3 AV530_009473 AV530_009473 CCDC94 CCDC94 AV530_008359 AV530_008359 AV530_018652 AV530_018652 PRPF18 PRPF18 HFM1 HFM1 SF3B3 SF3B3 DHX38 DHX38 PRPF8 PRPF8 SRRM3 SRRM3 ISY1 ISY1 DAW1 DAW1 AV530_002513 AV530_002513 SNRPD1 SNRPD1 AV530_014163 AV530_014163 WDR25 WDR25 SNW1 SNW1 RBMX2 RBMX2 AV530_016370 AV530_016370 AV530_019882 AV530_019882 AV530_019880 AV530_019880 AV530_019881 AV530_019881 AV530_019877 AV530_019877 TXNL4A TXNL4A WDR70 WDR70 AQR AQR AV530_015576 AV530_015576 AV530_015952 AV530_015952 PRPF6 PRPF6 CTNNBL1 CTNNBL1 AV530_018094 AV530_018094 AV530_018152 AV530_018152 DHX35 DHX35 PRPF3 PRPF3 AV530_009222 AV530_009222 SNRPF SNRPF WDR53 WDR53 USP39 USP39 USP39-2 USP39-2 AV530_001500 AV530_001500 SNRNP27 SNRNP27 SNRPG SNRPG SNRNP200 SNRNP200 AV530_007864 AV530_007864 BUD31 BUD31 AV530_007865 AV530_007865 RBM22 RBM22 ZMAT2 ZMAT2 DDX46 DDX46 SLU7 SLU7 SNRPC SNRPC PPIL1 PPIL1 SF3A2 SF3A2 RBM41 RBM41 SF3B1 SF3B1 CWC15 CWC15 PPWD1 PPWD1 CWC27 CWC27
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPB2U2 small nuclear ribonucleoprotein B. (226 aa)
CRNKL1Crooked neck-like protein 1. (686 aa)
SF3B4Splicing factor 3B subunit 4. (237 aa)
AV530_008795Tr-type G domain-containing protein. (345 aa)
WBP4WW domain-binding protein 4. (416 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4. (536 aa)
ZNF830Zinc finger protein 830. (362 aa)
CWF19L2CWF19-like protein 2. (910 aa)
BUD13BUD13-like protein. (548 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ZCRB1Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (185 aa)
WBP11WW domain-binding protein 11. (646 aa)
MFAP1Microfibrillar-associated protein 1. (439 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (232 aa)
DHX15Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (765 aa)
SYF2Pre-mRNA-splicing factor SYF2. (257 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
AV530_008430Uncharacterized protein. (436 aa)
SNRNP40U5 small nuclear ribonucleoprotein. (298 aa)
SNIP1Smad nuclear-interacting protein 1 isoform C. (542 aa)
SF3A3Splicing factor 3A subunit 3. (501 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SF3B5Splicing factor 3B subunit 5. (145 aa)
CDC40Pre-mRNA-processing factor 17. (580 aa)
SF3B6Splicing factor 3B subunit 6. (123 aa)
CDC5LCell division cycle 5-like protein. (1218 aa)
PRPF19Pre-mRNA-processing factor 19. (504 aa)
CCDC12Coiled-coil domain-containing protein 12. (115 aa)
CWC25Pre-mRNA-splicing factor CWC25-like protein. (415 aa)
DHX8ATP-dependent RNA helicase DHX8. (1228 aa)
DDX42ATP-dependent RNA helicase DDX42. (952 aa)
AV530_010187EFG_IV domain-containing protein. (217 aa)
AV530_001418RING finger protein 113A. (328 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (88 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
SF3A1Splicing factor 3A subunit 1. (783 aa)
ZMAT5Zinc finger matrin-type protein 5. (100 aa)
PLRG1Pleiotropic regulator 1. (513 aa)
AV530_002636RRM domain-containing protein. (227 aa)
SART3Squamous cell carcinoma antigen recognized by T-cells 3. (933 aa)
AV530_017580Uncharacterized protein. (159 aa)
DDX23Putative ATP-dependent RNA helicase DDX23 isoform B. (820 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
PRPF38APre-mRNA-splicing factor 38A. (312 aa)
RNPC3Alpha-amylase. (877 aa)
AV530_009473Uncharacterized protein. (86 aa)
CCDC94Coiled-coil domain-containing protein 94. (294 aa)
AV530_008359Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (76 aa)
AV530_018652Prp31_C domain-containing protein. (69 aa)
PRPF18Pre-mRNA-splicing factor 18 isoform B. (351 aa)
HFM1Putative ATP-dependent DNA helicase HFM1 isoform A. (1469 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
DHX38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1229 aa)
PRPF8Pre-mRNA-processing-splicing factor 8. (2700 aa)
SRRM3Serine/arginine repetitive matrix protein 3. (652 aa)
ISY1Pre-mRNA-splicing factor ISY1-like protein. (310 aa)
DAW1Dynein assembly factor with WDR repeat domains 1. (415 aa)
AV530_002513Pre-mRNA-splicing factor CWC22-like protein. (796 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
AV530_014163Uncharacterized protein. (466 aa)
WDR25WD repeat-containing protein 25. (509 aa)
SNW1SNW domain-containing protein 1. (538 aa)
RBMX2RNA-binding motif protein, X-linked 2. (308 aa)
AV530_016370Ubiquitin-like domain-containing protein. (73 aa)
AV530_019882Putative ATP-dependent RNA helicase DHX34. (191 aa)
AV530_019880OB_NTP_bind domain-containing protein. (432 aa)
AV530_019881Putative ATP-dependent RNA helicase DHX34-like. (148 aa)
AV530_019877Putative ATP-dependent RNA helicase DHX34-like. (328 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
WDR70WD repeat-containing protein 70. (649 aa)
AQRIntron-binding protein aquarius. (1467 aa)
AV530_015576HA2 domain-containing protein. (297 aa)
AV530_015952Uncharacterized protein. (187 aa)
PRPF6Pre-mRNA-processing factor 6. (941 aa)
CTNNBL1Beta-catenin-like protein 1. (563 aa)
AV530_018094Small nuclear ribonucleoprotein-associated protein. (240 aa)
AV530_018152Uncharacterized protein. (173 aa)
DHX35Putative ATP-dependent RNA helicase DHX35 isoform A. (557 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3. (774 aa)
AV530_009222Myotubularin phosphatase domain-containing protein. (288 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
WDR53WD repeat-containing protein 53 isoform B. (354 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2. (298 aa)
USP39-2U4/U6.U5 tri-snRNP-associated protein 2. (124 aa)
AV530_001500USP domain-containing protein. (91 aa)
SNRNP27U4/U6.U5 small nuclear ribonucleoprotein. (156 aa)
SNRPGSmall nuclear ribonucleoprotein G. (76 aa)
SNRNP200U5 small nuclear ribonucleoprotein helicase. (2094 aa)
AV530_007864Uncharacterized protein. (97 aa)
BUD31BUD31-like protein. (144 aa)
AV530_007865PSP domain-containing protein. (497 aa)
RBM22Pre-mRNA-splicing factor RBM22. (420 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
DDX46Putative ATP-dependent RNA helicase DDX46. (1040 aa)
SLU7Pre-mRNA-splicing factor SLU7. (618 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (178 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
SF3A2Splicing factor 3A subunit 2. (295 aa)
RBM41RNA-binding protein 41. (400 aa)
SF3B1Splicing factor 3B subunit 1. (1301 aa)
CWC15Spliceosome-associated CWC15-like protein. (240 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (619 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27-like protein. (481 aa)
Your Current Organism:
Patagioenas fasciata
NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis
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