22 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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textmining

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Your Input:
	SNRPB2	U2 small nuclear ribonucleoprotein B. (226 aa)
	SF3B4	Splicing factor 3B subunit 4. (237 aa)
	SF3A3	Splicing factor 3A subunit 3. (501 aa)
	SF3B5	Splicing factor 3B subunit 5. (145 aa)
	SF3B6	Splicing factor 3B subunit 6. (123 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (88 aa)
	SF3A1	Splicing factor 3A subunit 1. (783 aa)
	AV530_002636	RRM domain-containing protein. (227 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
	AV530_014163	Uncharacterized protein. (466 aa)
	AV530_015952	Uncharacterized protein. (187 aa)
	AV530_018094	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	AV530_009222	Myotubularin phosphatase domain-containing protein. (288 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (86 aa)
	SNRPG	Small nuclear ribonucleoprotein G. (76 aa)
	AV530_007864	Uncharacterized protein. (97 aa)
	AV530_007865	PSP domain-containing protein. (497 aa)
	DDX46	Putative ATP-dependent RNA helicase DDX46. (1040 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (178 aa)
	SF3A2	Splicing factor 3A subunit 2. (295 aa)
	SF3B1	Splicing factor 3B subunit 1. (1301 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_002636	AV530_007864	A0A1V4JT33	A0A1V4KRJ7	RRM domain-containing protein.	Uncharacterized protein.	0.883
AV530_002636	AV530_007865	A0A1V4JT33	A0A1V4KT68	RRM domain-containing protein.	PSP domain-containing protein.	0.883
AV530_002636	AV530_009222	A0A1V4JT33	A0A1V4KMJ8	RRM domain-containing protein.	Myotubularin phosphatase domain-containing protein.	0.842
AV530_002636	AV530_014163	A0A1V4JT33	A0A1V4K7E2	RRM domain-containing protein.	Uncharacterized protein.	0.943
AV530_002636	AV530_015952	A0A1V4JT33	A0A1V4KJI2	RRM domain-containing protein.	Uncharacterized protein.	0.857
AV530_002636	AV530_018094	A0A1V4JT33	A0A1V4KKY7	RRM domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.980
AV530_002636	DDX46	A0A1V4JT33	A0A1V4KV26	RRM domain-containing protein.	Putative ATP-dependent RNA helicase DDX46.	0.757
AV530_002636	SF3A1	A0A1V4JT33	A0A1V4JSL1	RRM domain-containing protein.	Splicing factor 3A subunit 1.	0.678
AV530_002636	SF3A2	A0A1V4JT33	A0A1V4KWV6	RRM domain-containing protein.	Splicing factor 3A subunit 2.	0.912
AV530_002636	SF3A3	A0A1V4JT33	A0A1V4JID2	RRM domain-containing protein.	Splicing factor 3A subunit 3.	0.873
AV530_002636	SF3B1	A0A1V4JT33	A0A1V4L0X3	RRM domain-containing protein.	Splicing factor 3B subunit 1.	0.943
AV530_002636	SF3B3	A0A1V4JT33	A0A1V4K124	RRM domain-containing protein.	Splicing factor 3B subunit 3.	0.912
AV530_002636	SF3B4	A0A1V4JT33	A0A1V4J2N4	RRM domain-containing protein.	Splicing factor 3B subunit 4.	0.842
AV530_002636	SF3B5	A0A1V4JT33	A0A1V4JL22	RRM domain-containing protein.	Splicing factor 3B subunit 5.	0.918
AV530_002636	SF3B6	A0A1V4JT33	A0A1V4JN86	RRM domain-containing protein.	Splicing factor 3B subunit 6.	0.686
AV530_002636	SNRPB2	A0A1V4JT33	A0A1V4IFY6	RRM domain-containing protein.	U2 small nuclear ribonucleoprotein B.	0.943
AV530_002636	SNRPC	A0A1V4JT33	A0A1V4KWP8	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.990
AV530_002636	SNRPD1	A0A1V4JT33	A0A1V4K784	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.991
AV530_002636	SNRPD3	A0A1V4JT33	A0A1V4JRH5	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.992
AV530_002636	SNRPF	A0A1V4JT33	A0A1V4KPX6	RRM domain-containing protein.	Small nuclear ribonucleoprotein F.	0.987