STRINGSTRING
SNAPC3 SNAPC3 BDP1 BDP1 EEPD1 EEPD1 SNAPC4 SNAPC4 GTF3C5 GTF3C5 GTF3C4 GTF3C4 NELFB NELFB CDK9 CDK9 SIDT2 SIDT2 POLR2F POLR2F RNMT RNMT POLR3H POLR3H TCEA3 TCEA3 TCEANC TCEANC SNAPC5 SNAPC5 LEO1 LEO1 MYEF2 MYEF2 POLR1A POLR1A AV530_019969 AV530_019969 SRBD1 SRBD1 CCDC66 CCDC66 TBP TBP POLR1C POLR1C RNGTT RNGTT GTF3C6 GTF3C6 POLR2L POLR2L AV530_005803 AV530_005803 CTR9 CTR9 TNKS1BP1 TNKS1BP1 AV530_013595 AV530_013595 SSRP1 SSRP1 CDK12 CDK12 AV530_001443 AV530_001443 POLR2B POLR2B POLR3G POLR3G AFF1 AFF1 GTF3C2 GTF3C2 AV530_009469 AV530_009469 SUPT5H SUPT5H TCEANC2 TCEANC2 CDC73 CDC73 SUPT4H1 SUPT4H1 COQ9 COQ9 CRCP CRCP SUPT6H SUPT6H POLR2J POLR2J POLR2H POLR2H ZNF512 ZNF512 IWS1 IWS1 CCNT2 CCNT2 EAF2 EAF2 POLR2D POLR2D CTDSP1 CTDSP1 POLR3B POLR3B GTF3A GTF3A AV530_009839 AV530_009839 AV530_009842 AV530_009842 BRF1 BRF1 SNAPC1 SNAPC1 CCNK CCNK CINP CINP POLR3F POLR3F POLR1B POLR1B C1GALT1 C1GALT1 TWISTNB TWISTNB EAF1 EAF1 RRN3 RRN3 CTDP1 CTDP1 NELFCD NELFCD RTF1 RTF1 AV530_013971 AV530_013971 TCEA1 TCEA1 POLR2K POLR2K POLR3D POLR3D AV530_015815 AV530_015815 BRF2 BRF2 AV530_015956 AV530_015956 MLLT3 MLLT3 TCEA2 TCEA2 ZNF512B ZNF512B POLR3A POLR3A MAF1 MAF1 CROCC CROCC AV530_011409 AV530_011409 AV530_011410 AV530_011410 POLR3C POLR3C MLLT1 MLLT1 POLR2E POLR2E AV530_006814 AV530_006814 ELL ELL AV530_001145 AV530_001145 AV530_007076 AV530_007076 AFF4 AFF4 POLR3E POLR3E GTF3C1 GTF3C1 AV530_002978 AV530_002978 AV530_003942 AV530_003942 SHROOM3 SHROOM3 AV530_002663 AV530_002663 CDK13 CDK13 ELL2 ELL2 AV530_013851 AV530_013851 GTF3C3 GTF3C3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNAPC3snRNA-activating protein complex subunit 3. (340 aa)
BDP1Transcription factor TFIIIB component B''-like protein isoform C. (2278 aa)
EEPD1Endonuclease/exonuclease/phosphatase family domain-containing protein 1. (559 aa)
SNAPC4snRNA-activating protein complex subunit 4. (1102 aa)
GTF3C5General transcription factor 3C polypeptide 5. (513 aa)
GTF3C4General transcription factor 3C polypeptide 4. (690 aa)
NELFBNegative elongation factor B. (577 aa)
CDK9Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (339 aa)
SIDT2Transgelin; Belongs to the calponin family. (1145 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
RNMTmRNA cap guanine-N7 methyltransferase. (414 aa)
POLR3HDNA-directed RNA polymerase III subunit RPC8. (206 aa)
TCEA3Transcription elongation factor A protein 3. (413 aa)
TCEANCTranscription elongation factor A N-terminal and central domain-containing protein. (360 aa)
SNAPC5snRNA-activating protein complex subunit 5. (92 aa)
LEO1RNA polymerase-associated protein LEO1. (656 aa)
MYEF2Myelin expression factor 2 isoform A. (585 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1702 aa)
AV530_019969Transcription elongation factor B polypeptide 3-like. (779 aa)
SRBD1S1 RNA-binding domain-containing protein 1. (1015 aa)
CCDC66Coiled-coil domain-containing protein 66. (897 aa)
TBPTATA-box-binding protein. (304 aa)
POLR1CDNA-directed RNA polymerases I and III subunit RPAC1. (346 aa)
RNGTTPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (601 aa)
GTF3C6General transcription factor 3C polypeptide 6 isoform A. (221 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
AV530_005803TFIIS N-terminal domain-containing protein. (554 aa)
CTR9RNA polymerase-associated CTR9-like protein. (1167 aa)
TNKS1BP1Tankyrase-1-binding protein. (577 aa)
AV530_013595Uncharacterized protein. (508 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (723 aa)
CDK12Cyclin-dependent kinase 12 isoform B. (1398 aa)
AV530_001443L27 domain-containing protein. (721 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
POLR3GDNA-directed RNA polymerase III subunit RPC7. (162 aa)
AFF1AF4/FMR2 family member 1 isoform B. (1270 aa)
GTF3C2General transcription factor 3C polypeptide 2. (895 aa)
AV530_009469Spt5-NGN domain-containing protein. (207 aa)
SUPT5HTranscription elongation factor SPT5 isoform A. (317 aa)
TCEANC2Transcription elongation factor A N-terminal and central domain-containing protein 2. (177 aa)
CDC73Parafibromin. (531 aa)
SUPT4H1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
COQ9Ubiquinone biosynthesis protein COQ9, mitochondrial. (634 aa)
CRCPDNA-directed RNA polymerase III subunit RPC9. (146 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1722 aa)
POLR2JDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ZNF512Zinc finger protein 512. (410 aa)
IWS1IWS1-like protein isoform C. (769 aa)
CCNT2Cyclin-T2 isoform B; Belongs to the cyclin family. (687 aa)
EAF2ELL-associated factor 2. (264 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (142 aa)
CTDSP1Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1. (272 aa)
POLR3BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
GTF3ATranscription factor IIIA. (349 aa)
AV530_009839TFIIB-type domain-containing protein. (191 aa)
AV530_009842BRF1 domain-containing protein. (246 aa)
BRF1Transcription factor IIIB subunit. (267 aa)
SNAPC1snRNA-activating protein complex subunit 1. (361 aa)
CCNKCyclin-K isoform A; Belongs to the cyclin family. (584 aa)
CINPCyclin-dependent kinase 2-interacting protein. (211 aa)
POLR3FDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (314 aa)
POLR1BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1067 aa)
C1GALT1Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1. (400 aa)
TWISTNBDNA-directed RNA polymerase I subunit RPA43. (287 aa)
EAF1ELL-associated factor 1. (259 aa)
RRN3RNA polymerase I-specific transcription initiation factor RRN3 isoform B. (868 aa)
CTDP1RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (945 aa)
NELFCDNegative elongation factor C/D isoform A. (583 aa)
RTF1RNA polymerase-associated RTF1-like protein. (670 aa)
AV530_013971RNA_pol_Rpb1_7 domain-containing protein. (101 aa)
TCEA1Transcription elongation factor A protein 1 isoform B. (304 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (128 aa)
POLR3DDNA-directed RNA polymerase III subunit RPC4 isoform B. (397 aa)
AV530_015815TYR_PHOSPHATASE_2 domain-containing protein. (755 aa)
BRF2Transcription factor IIIB subunit. (356 aa)
AV530_015956RNA_pol_Rpb1_5 domain-containing protein. (520 aa)
MLLT3Protein AF-9. (579 aa)
TCEA2Transcription elongation factor A protein 2. (325 aa)
ZNF512BZinc finger protein 512B. (767 aa)
POLR3ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (843 aa)
MAF1Repressor of RNA polymerase III transcription MAF1-like protein. (139 aa)
CROCCRootletin. (914 aa)
AV530_011409Uncharacterized protein. (130 aa)
AV530_011410Uncharacterized protein. (594 aa)
POLR3CRNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (522 aa)
MLLT1Protein ENL. (554 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
AV530_006814ELL domain-containing protein. (75 aa)
ELLRNA polymerase II elongation factor ELL. (554 aa)
AV530_001145DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
AV530_007076Uncharacterized protein. (90 aa)
AFF4AF4/FMR2 family member 4. (1228 aa)
POLR3EDNA-directed RNA polymerase III subunit RPC5. (729 aa)
GTF3C1General transcription factor 3C polypeptide 1 isoform A. (2147 aa)
AV530_002978RRM domain-containing protein. (209 aa)
AV530_003942DNA-directed RNA polymerases I and III subunit RPAC2. (114 aa)
SHROOM3Protein Shroom3 isoform B. (2010 aa)
AV530_002663FACT complex subunit SPT16-like. (948 aa)
CDK13Cyclin-dependent kinase 13 isoform B. (1447 aa)
ELL2RNA polymerase II elongation factor ELL2. (586 aa)
AV530_013851Keratin. (101 aa)
GTF3C3General transcription factor 3C polypeptide 3. (909 aa)
Your Current Organism:
Patagioenas fasciata
NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis
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