75 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PPIE	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (765 aa)
	SNRPA1	U2 small nuclear ribonucleoprotein A. (232 aa)
	MFAP1	Microfibrillar-associated protein 1. (439 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	AV530_013054	Putative RNA-binding protein Luc7-like 2. (398 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	BUD13	BUD13-like protein. (548 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (114 aa)
	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4. (536 aa)
	SMU1	WD40 repeat-containing protein SMU1. (499 aa)
	WBP4	WW domain-binding protein 4. (416 aa)
	AV530_008795	Tr-type G domain-containing protein. (345 aa)
	SF3B4	Splicing factor 3B subunit 4. (237 aa)
	CRNKL1	Crooked neck-like protein 1. (686 aa)
	AV530_007865	PSP domain-containing protein. (497 aa)
	LUC7L	Putative RNA-binding protein Luc7-like 1 isoform A. (379 aa)
	BUD31	BUD31-like protein. (144 aa)
	AV530_007864	Uncharacterized protein. (97 aa)
	SNRNP200	U5 small nuclear ribonucleoprotein helicase. (2094 aa)
	SNRPG	Small nuclear ribonucleoprotein G. (76 aa)
	SYF2	Pre-mRNA-splicing factor SYF2. (257 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (86 aa)
	AV530_018094	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	PRPF6	Pre-mRNA-processing factor 6. (941 aa)
	AQR	Intron-binding protein aquarius. (1467 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	EIF4A3	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (412 aa)
	SNW1	SNW domain-containing protein 1. (538 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
	AV530_002513	Pre-mRNA-splicing factor CWC22-like protein. (796 aa)
	PRPF40A	Pre-mRNA-processing factor 40-like protein A isoform B. (935 aa)
	ISY1	Pre-mRNA-splicing factor ISY1-like protein. (310 aa)
	PRPF8	Pre-mRNA-processing-splicing factor 8. (2700 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	PRPF18	Pre-mRNA-splicing factor 18 isoform B. (351 aa)
	AV530_018652	Prp31_C domain-containing protein. (69 aa)
	CCDC94	Coiled-coil domain-containing protein 94. (294 aa)
	AV530_009473	Uncharacterized protein. (86 aa)
	PRPF38A	Pre-mRNA-splicing factor 38A. (312 aa)
	LSM6	U6 snRNA-associated Sm-like protein LSm6. (112 aa)
	AV530_017580	Uncharacterized protein. (159 aa)
	AV530_002636	RRM domain-containing protein. (227 aa)
	PLRG1	Pleiotropic regulator 1. (513 aa)
	SF3A1	Splicing factor 3A subunit 1. (783 aa)
	TFIP11	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (88 aa)
	RBM22	Pre-mRNA-splicing factor RBM22. (420 aa)
	ZMAT2	Zinc finger matrin-type protein 2. (199 aa)
	LUC7L3	Luc7-like protein 3. (390 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (178 aa)
	PPIL1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	SF3A2	Splicing factor 3A subunit 2. (295 aa)
	HTATSF1	HIV Tat-specific factor 1. (451 aa)
	U2AF2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (352 aa)
	PRPF39	Pre-mRNA-processing factor 39 isoform B. (1172 aa)
	SF3B1	Splicing factor 3B subunit 1. (1301 aa)
	CWC15	Spliceosome-associated CWC15-like protein. (240 aa)
	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27-like protein. (481 aa)
	AV530_001418	RING finger protein 113A. (328 aa)
	AV530_010187	EFG_IV domain-containing protein. (217 aa)
	DHX8	ATP-dependent RNA helicase DHX8. (1228 aa)
	CASC3	Protein CASC3. (1123 aa)
	CWC25	Pre-mRNA-splicing factor CWC25-like protein. (415 aa)
	CCDC12	Coiled-coil domain-containing protein 12. (115 aa)
	PRPF19	Pre-mRNA-processing factor 19. (504 aa)
	SF3B6	Splicing factor 3B subunit 6. (123 aa)
	CDC40	Pre-mRNA-processing factor 17. (580 aa)
	SF3B5	Splicing factor 3B subunit 5. (145 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	SF3A3	Splicing factor 3A subunit 3. (501 aa)
	SNIP1	Smad nuclear-interacting protein 1 isoform C. (542 aa)
	SNRNP40	U5 small nuclear ribonucleoprotein. (298 aa)
	AV530_008430	Uncharacterized protein. (436 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR	AV530_001418	A0A1V4KFA9	A0A1V4JRA4	Intron-binding protein aquarius.	RING finger protein 113A.	0.660
AQR	AV530_002513	A0A1V4KFA9	A0A1V4K6T7	Intron-binding protein aquarius.	Pre-mRNA-splicing factor CWC22-like protein.	0.912
AQR	AV530_007864	A0A1V4KFA9	A0A1V4KRJ7	Intron-binding protein aquarius.	Uncharacterized protein.	0.597
AQR	AV530_007865	A0A1V4KFA9	A0A1V4KT68	Intron-binding protein aquarius.	PSP domain-containing protein.	0.597
AQR	AV530_008430	A0A1V4KFA9	A0A1V4JHX4	Intron-binding protein aquarius.	Uncharacterized protein.	0.906
AQR	AV530_008795	A0A1V4KFA9	A0A1V4J3G1	Intron-binding protein aquarius.	Tr-type G domain-containing protein.	0.906
AQR	AV530_010187	A0A1V4KFA9	A0A1V4JR11	Intron-binding protein aquarius.	EFG_IV domain-containing protein.	0.906
AQR	AV530_018094	A0A1V4KFA9	A0A1V4KKY7	Intron-binding protein aquarius.	Small nuclear ribonucleoprotein-associated protein.	0.913
AQR	BUD13	A0A1V4KFA9	A0A1V4J934	Intron-binding protein aquarius.	BUD13-like protein.	0.668
AQR	BUD31	A0A1V4KFA9	A0A1V4KSF8	Intron-binding protein aquarius.	BUD31-like protein.	0.998
AQR	CASC3	A0A1V4KFA9	A0A1V4JQJ6	Intron-binding protein aquarius.	Protein CASC3.	0.908
AQR	CCDC94	A0A1V4KFA9	A0A1V4JZP6	Intron-binding protein aquarius.	Coiled-coil domain-containing protein 94.	0.907
AQR	CDC40	A0A1V4KFA9	A0A1V4JM79	Intron-binding protein aquarius.	Pre-mRNA-processing factor 17.	0.979
AQR	CRNKL1	A0A1V4KFA9	A0A1V4IHJ0	Intron-binding protein aquarius.	Crooked neck-like protein 1.	0.999
AQR	CWC15	A0A1V4KFA9	A0A1V4L100	Intron-binding protein aquarius.	Spliceosome-associated CWC15-like protein.	0.957
AQR	CWC25	A0A1V4KFA9	A0A1V4JQF6	Intron-binding protein aquarius.	Pre-mRNA-splicing factor CWC25-like protein.	0.662
AQR	CWC27	A0A1V4KFA9	A0A1V4L1N1	Intron-binding protein aquarius.	Peptidyl-prolyl cis-trans isomerase CWC27-like protein.	0.799
AQR	DHX15	A0A1V4KFA9	A0A1V4JFJ2	Intron-binding protein aquarius.	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	0.848
AQR	DHX8	A0A1V4KFA9	A0A1V4JQX8	Intron-binding protein aquarius.	ATP-dependent RNA helicase DHX8.	0.951
AQR	EIF4A3	A0A1V4KFA9	A0A1V4KAZ8	Intron-binding protein aquarius.	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	0.959