23 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNRNP48	U11/U12 small nuclear ribonucleoprotein. (305 aa)
	ZMAT5	Zinc finger matrin-type protein 5. (100 aa)
	SNRNP35	U11/U12 small nuclear ribonucleoprotein. (265 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (88 aa)
	SF3B6	Splicing factor 3B subunit 6. (123 aa)
	SF3B5	Splicing factor 3B subunit 5. (145 aa)
	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (765 aa)
	UBAP1L	Ubiquitin-associated protein 1-like isoform B. (851 aa)
	AV530_012617	Uncharacterized protein. (71 aa)
	ZRSR2	U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein 2. (327 aa)
	ZCRB1	Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (185 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (114 aa)
	SF3B4	Splicing factor 3B subunit 4. (237 aa)
	SF3B1	Splicing factor 3B subunit 1. (1301 aa)
	RBM41	RNA-binding protein 41. (400 aa)
	SNRNP25	U11/U12 small nuclear ribonucleoprotein. (91 aa)
	AV530_007865	PSP domain-containing protein. (497 aa)
	AV530_007864	Uncharacterized protein. (97 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (86 aa)
	SNRPG	Small nuclear ribonucleoprotein G. (76 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	RNPC3	Alpha-amylase. (877 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_007864	DHX15	A0A1V4KRJ7	A0A1V4JFJ2	Uncharacterized protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	0.854
AV530_007864	LSM7	A0A1V4KRJ7	A0A1V4J7G8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm7.	0.859
AV530_007864	RBM41	A0A1V4KRJ7	A0A1V4KY92	Uncharacterized protein.	RNA-binding protein 41.	0.828
AV530_007864	RNPC3	A0A1V4KRJ7	A0A1V4JYR6	Uncharacterized protein.	Alpha-amylase.	0.879
AV530_007864	SF3B1	A0A1V4KRJ7	A0A1V4L0X3	Uncharacterized protein.	Splicing factor 3B subunit 1.	0.991
AV530_007864	SF3B3	A0A1V4KRJ7	A0A1V4K124	Uncharacterized protein.	Splicing factor 3B subunit 3.	0.990
AV530_007864	SF3B4	A0A1V4KRJ7	A0A1V4J2N4	Uncharacterized protein.	Splicing factor 3B subunit 4.	0.990
AV530_007864	SF3B5	A0A1V4KRJ7	A0A1V4JL22	Uncharacterized protein.	Splicing factor 3B subunit 5.	0.989
AV530_007864	SF3B6	A0A1V4KRJ7	A0A1V4JN86	Uncharacterized protein.	Splicing factor 3B subunit 6.	0.987
AV530_007864	SNRNP35	A0A1V4KRJ7	A0A1V4JSD0	Uncharacterized protein.	U11/U12 small nuclear ribonucleoprotein.	0.883
AV530_007864	SNRNP48	A0A1V4KRJ7	A0A1V4JWF9	Uncharacterized protein.	U11/U12 small nuclear ribonucleoprotein.	0.770
AV530_007864	SNRPD1	A0A1V4KRJ7	A0A1V4K784	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.968
AV530_007864	SNRPD3	A0A1V4KRJ7	A0A1V4JRH5	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.970
AV530_007864	SNRPF	A0A1V4KRJ7	A0A1V4KPX6	Uncharacterized protein.	Small nuclear ribonucleoprotein F.	0.963
AV530_007864	SNRPG	A0A1V4KRJ7	A0A1V4KR77	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.965
AV530_007864	ZCRB1	A0A1V4KRJ7	A0A1V4J9S6	Uncharacterized protein.	Zinc finger CCHC-type and RNA-binding motif-containing protein 1.	0.786
AV530_007864	ZMAT5	A0A1V4KRJ7	A0A1V4JSR5	Uncharacterized protein.	Zinc finger matrin-type protein 5.	0.913
AV530_007865	DHX15	A0A1V4KT68	A0A1V4JFJ2	PSP domain-containing protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	0.854
AV530_007865	LSM7	A0A1V4KT68	A0A1V4J7G8	PSP domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.859
AV530_007865	RBM41	A0A1V4KT68	A0A1V4KY92	PSP domain-containing protein.	RNA-binding protein 41.	0.828