41 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SF3B1	Splicing factor 3B subunit 1. (1301 aa)
	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27-like protein. (481 aa)
	AV530_001418	RING finger protein 113A. (328 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (88 aa)
	SF3A1	Splicing factor 3A subunit 1. (783 aa)
	AV530_017580	Uncharacterized protein. (159 aa)
	LSM6	U6 snRNA-associated Sm-like protein LSm6. (112 aa)
	PRPF38A	Pre-mRNA-splicing factor 38A. (312 aa)
	AV530_009473	Uncharacterized protein. (86 aa)
	AV530_018652	Prp31_C domain-containing protein. (69 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	PRPF8	Pre-mRNA-processing-splicing factor 8. (2700 aa)
	AV530_002513	Pre-mRNA-splicing factor CWC22-like protein. (796 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	PRPF6	Pre-mRNA-processing factor 6. (941 aa)
	AV530_018094	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (86 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
	SNRNP200	U5 small nuclear ribonucleoprotein helicase. (2094 aa)
	AV530_007864	Uncharacterized protein. (97 aa)
	AV530_007865	PSP domain-containing protein. (497 aa)
	ZMAT2	Zinc finger matrin-type protein 2. (199 aa)
	SF3A2	Splicing factor 3A subunit 2. (295 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	SF3A3	Splicing factor 3A subunit 3. (501 aa)
	SNIP1	Smad nuclear-interacting protein 1 isoform C. (542 aa)
	AV530_008430	Uncharacterized protein. (436 aa)
	SNRPA1	U2 small nuclear ribonucleoprotein A. (232 aa)
	MFAP1	Microfibrillar-associated protein 1. (439 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	BUD13	BUD13-like protein. (548 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (114 aa)
	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4. (536 aa)
	SMU1	WD40 repeat-containing protein SMU1. (499 aa)
	WBP4	WW domain-binding protein 4. (416 aa)
	AV530_008795	Tr-type G domain-containing protein. (345 aa)
	SF3B4	Splicing factor 3B subunit 4. (237 aa)
	AV530_010187	EFG_IV domain-containing protein. (217 aa)
	SF3B5	Splicing factor 3B subunit 5. (145 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_001418	AV530_002513	A0A1V4JRA4	A0A1V4K6T7	RING finger protein 113A.	Pre-mRNA-splicing factor CWC22-like protein.	0.989
AV530_001418	AV530_007864	A0A1V4JRA4	A0A1V4KRJ7	RING finger protein 113A.	Uncharacterized protein.	0.942
AV530_001418	AV530_007865	A0A1V4JRA4	A0A1V4KT68	RING finger protein 113A.	PSP domain-containing protein.	0.942
AV530_001418	AV530_008430	A0A1V4JRA4	A0A1V4JHX4	RING finger protein 113A.	Uncharacterized protein.	0.803
AV530_001418	AV530_008795	A0A1V4JRA4	A0A1V4J3G1	RING finger protein 113A.	Tr-type G domain-containing protein.	0.803
AV530_001418	AV530_010187	A0A1V4JRA4	A0A1V4JR11	RING finger protein 113A.	EFG_IV domain-containing protein.	0.803
AV530_001418	AV530_018094	A0A1V4JRA4	A0A1V4KKY7	RING finger protein 113A.	Small nuclear ribonucleoprotein-associated protein.	0.906
AV530_001418	BUD13	A0A1V4JRA4	A0A1V4J934	RING finger protein 113A.	BUD13-like protein.	0.962
AV530_001418	CWC27	A0A1V4JRA4	A0A1V4L1N1	RING finger protein 113A.	Peptidyl-prolyl cis-trans isomerase CWC27-like protein.	0.989
AV530_001418	PRPF6	A0A1V4JRA4	A0A1V4KKG8	RING finger protein 113A.	Pre-mRNA-processing factor 6.	0.441
AV530_001418	PRPF8	A0A1V4JRA4	A0A1V4K2R1	RING finger protein 113A.	Pre-mRNA-processing-splicing factor 8.	0.938
AV530_001418	SF3A1	A0A1V4JRA4	A0A1V4JSL1	RING finger protein 113A.	Splicing factor 3A subunit 1.	0.957
AV530_001418	SF3A2	A0A1V4JRA4	A0A1V4KWV6	RING finger protein 113A.	Splicing factor 3A subunit 2.	0.968
AV530_001418	SF3A3	A0A1V4JRA4	A0A1V4JID2	RING finger protein 113A.	Splicing factor 3A subunit 3.	0.939
AV530_001418	SF3B1	A0A1V4JRA4	A0A1V4L0X3	RING finger protein 113A.	Splicing factor 3B subunit 1.	0.967
AV530_001418	SF3B3	A0A1V4JRA4	A0A1V4K124	RING finger protein 113A.	Splicing factor 3B subunit 3.	0.952
AV530_001418	SF3B4	A0A1V4JRA4	A0A1V4J2N4	RING finger protein 113A.	Splicing factor 3B subunit 4.	0.879
AV530_001418	SF3B5	A0A1V4JRA4	A0A1V4JL22	RING finger protein 113A.	Splicing factor 3B subunit 5.	0.922
AV530_001418	SNIP1	A0A1V4JRA4	A0A1V4JIC3	RING finger protein 113A.	Smad nuclear-interacting protein 1 isoform C.	0.952
AV530_001418	SNRNP200	A0A1V4JRA4	A0A1V4KR80	RING finger protein 113A.	U5 small nuclear ribonucleoprotein helicase.	0.988