STRINGSTRING
SNRPA1 SNRPA1 LSM3 LSM3 AV530_002513 AV530_002513 RBM44 RBM44 SNRPD1 SNRPD1 AV530_014164 AV530_014164 WDR25 WDR25 SNW1 SNW1 EIF4A3 EIF4A3 AQR AQR PNN PNN PRPF6 PRPF6 AV530_018094 AV530_018094 AV530_018152 AV530_018152 DHX35 DHX35 SNRPF SNRPF SNRPG SNRPG SNRNP200 SNRNP200 AV530_007864 AV530_007864 SKIV2L2 SKIV2L2 BUD31 BUD31 AV530_007865 AV530_007865 DDX41 DDX41 RBM22 RBM22 DDX5 DDX5 PPIL1 PPIL1 SF3A2 SF3A2 AV530_011019 AV530_011019 SF3B1 SF3B1 CWC15 CWC15 PPWD1 PPWD1 CWC27 CWC27 SF3A3 SF3A3 SNRNP40 SNRNP40 AV530_008430 AV530_008430 PPIE PPIE AV530_019951 AV530_019951 SRRM1-2 SRRM1-2 SYF2 SYF2 FRG1 FRG1 CDC40 CDC40 HNRNPR HNRNPR LSM7 LSM7 AV530_008795 AV530_008795 CRNKL1 CRNKL1 EIF4A2 EIF4A2 ISY1 ISY1 PRPF8 PRPF8 DHX38 DHX38 SF3B3 SF3B3 GPATCH1 GPATCH1 AV530_017637 AV530_017637 CACTIN CACTIN AV530_009482 AV530_009482 HNRNPM HNRNPM MAGOH MAGOH PRPF4B PRPF4B PPIL3 PPIL3 DDX23 DDX23 AV530_017580 AV530_017580 PLRG1 PLRG1 SF3A1 SF3A1 ZCCHC8 ZCCHC8 TFIP11 TFIP11 AV530_018378 AV530_018378 DGCR14 DGCR14 PPIL2 PPIL2 SNRPD3 SNRPD3 AV530_010187 AV530_010187 DHX8 DHX8 PRPF19 PRPF19 SF3B6 SF3B6 SYNCRIP SYNCRIP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPA1U2 small nuclear ribonucleoprotein A. (232 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
AV530_002513Pre-mRNA-splicing factor CWC22-like protein. (796 aa)
RBM44RNA-binding protein 44. (1037 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
AV530_014164Uncharacterized protein. (226 aa)
WDR25WD repeat-containing protein 25. (509 aa)
SNW1SNW domain-containing protein 1. (538 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (412 aa)
AQRIntron-binding protein aquarius. (1467 aa)
PNNPinin. (1117 aa)
PRPF6Pre-mRNA-processing factor 6. (941 aa)
AV530_018094Small nuclear ribonucleoprotein-associated protein. (240 aa)
AV530_018152Uncharacterized protein. (173 aa)
DHX35Putative ATP-dependent RNA helicase DHX35 isoform A. (557 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
SNRPGSmall nuclear ribonucleoprotein G. (76 aa)
SNRNP200U5 small nuclear ribonucleoprotein helicase. (2094 aa)
AV530_007864Uncharacterized protein. (97 aa)
SKIV2L2Superkiller viralicidic activity 2-like 2. (1034 aa)
BUD31BUD31-like protein. (144 aa)
AV530_007865PSP domain-containing protein. (497 aa)
DDX41Putative ATP-dependent RNA helicase DDX41. (617 aa)
RBM22Pre-mRNA-splicing factor RBM22. (420 aa)
DDX5Putative ATP-dependent RNA helicase DDX5 isoform A; Belongs to the DEAD box helicase family. (603 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
SF3A2Splicing factor 3A subunit 2. (295 aa)
AV530_011019U-box domain-containing protein. (351 aa)
SF3B1Splicing factor 3B subunit 1. (1301 aa)
CWC15Spliceosome-associated CWC15-like protein. (240 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (619 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27-like protein. (481 aa)
SF3A3Splicing factor 3A subunit 3. (501 aa)
SNRNP40U5 small nuclear ribonucleoprotein. (298 aa)
AV530_008430Uncharacterized protein. (436 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
AV530_019951Uncharacterized protein. (452 aa)
SRRM1-2Serine/arginine repetitive matrix protein 1. (173 aa)
SYF2Pre-mRNA-splicing factor SYF2. (257 aa)
FRG1Protein FRG1. (256 aa)
CDC40Pre-mRNA-processing factor 17. (580 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (662 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (114 aa)
AV530_008795Tr-type G domain-containing protein. (345 aa)
CRNKL1Crooked neck-like protein 1. (686 aa)
EIF4A2Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family. (407 aa)
ISY1Pre-mRNA-splicing factor ISY1-like protein. (310 aa)
PRPF8Pre-mRNA-processing-splicing factor 8. (2700 aa)
DHX38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1229 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
GPATCH1G patch domain-containing protein 1. (936 aa)
AV530_017637RRM domain-containing protein. (91 aa)
CACTINCactin. (598 aa)
AV530_009482Uncharacterized protein. (237 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M isoform A. (483 aa)
MAGOHMago nashi-like protein. (195 aa)
PRPF4BSerine/threonine-kinase PRP4-like protein. (1005 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
DDX23Putative ATP-dependent RNA helicase DDX23 isoform B. (820 aa)
AV530_017580Uncharacterized protein. (159 aa)
PLRG1Pleiotropic regulator 1. (513 aa)
SF3A1Splicing factor 3A subunit 1. (783 aa)
ZCCHC8Zinc finger CCHC domain-containing protein 8. (747 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
AV530_018378U-box domain-containing protein. (207 aa)
DGCR14Protein DGCR14. (484 aa)
PPIL2Peptidyl-prolyl cis-trans isomerase-like 2. (363 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (88 aa)
AV530_010187EFG_IV domain-containing protein. (217 aa)
DHX8ATP-dependent RNA helicase DHX8. (1228 aa)
PRPF19Pre-mRNA-processing factor 19. (504 aa)
SF3B6Splicing factor 3B subunit 6. (123 aa)
SYNCRIPHeterogeneous nuclear ribonucleoprotein Q. (597 aa)
Your Current Organism:
Patagioenas fasciata
NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis
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