55 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (178 aa)
	SNRPB2	U2 small nuclear ribonucleoprotein B. (226 aa)
	AV530_008795	Tr-type G domain-containing protein. (345 aa)
	TXNL4B	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4. (536 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (114 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	AV530_013054	Putative RNA-binding protein Luc7-like 2. (398 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	SNRPA1	U2 small nuclear ribonucleoprotein A. (232 aa)
	AV530_008430	Uncharacterized protein. (436 aa)
	SNRNP40	U5 small nuclear ribonucleoprotein. (298 aa)
	SF3A3	Splicing factor 3A subunit 3. (501 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	SF3B5	Splicing factor 3B subunit 5. (145 aa)
	SF3B6	Splicing factor 3B subunit 6. (123 aa)
	AV530_010187	EFG_IV domain-containing protein. (217 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (88 aa)
	SF3A1	Splicing factor 3A subunit 1. (783 aa)
	AV530_002636	RRM domain-containing protein. (227 aa)
	SART3	Squamous cell carcinoma antigen recognized by T-cells 3. (933 aa)
	AV530_017580	Uncharacterized protein. (159 aa)
	LSM6	U6 snRNA-associated Sm-like protein LSm6. (112 aa)
	DDX23	Putative ATP-dependent RNA helicase DDX23 isoform B. (820 aa)
	AV530_009473	Uncharacterized protein. (86 aa)
	AV530_018652	Prp31_C domain-containing protein. (69 aa)
	PRPF18	Pre-mRNA-splicing factor 18 isoform B. (351 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	PRPF8	Pre-mRNA-processing-splicing factor 8. (2700 aa)
	PRPF40A	Pre-mRNA-processing factor 40-like protein A isoform B. (935 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
	AV530_014164	Uncharacterized protein. (226 aa)
	AV530_014163	Uncharacterized protein. (466 aa)
	RBMX2	RNA-binding motif protein, X-linked 2. (308 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	PRPF6	Pre-mRNA-processing factor 6. (941 aa)
	AV530_018094	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3. (774 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (86 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
	USP39	U4/U6.U5 tri-snRNP-associated protein 2. (298 aa)
	USP39-2	U4/U6.U5 tri-snRNP-associated protein 2. (124 aa)
	AV530_001500	USP domain-containing protein. (91 aa)
	SNRPG	Small nuclear ribonucleoprotein G. (76 aa)
	SNRNP200	U5 small nuclear ribonucleoprotein helicase. (2094 aa)
	AV530_007864	Uncharacterized protein. (97 aa)
	AV530_007865	PSP domain-containing protein. (497 aa)
	LUC7L	Putative RNA-binding protein Luc7-like 1 isoform A. (379 aa)
	ZMAT2	Zinc finger matrin-type protein 2. (199 aa)
	LUC7L3	Luc7-like protein 3. (390 aa)
	SF3A2	Splicing factor 3A subunit 2. (295 aa)
	HTATSF1	HIV Tat-specific factor 1. (451 aa)
	PRPF39	Pre-mRNA-processing factor 39 isoform B. (1172 aa)
	AV530_008557	Uncharacterized protein. (123 aa)
	SF3B1	Splicing factor 3B subunit 1. (1301 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_001500	AV530_002636	A0A1V4KR06	A0A1V4JT33	USP domain-containing protein.	RRM domain-containing protein.	0.631
AV530_001500	AV530_007864	A0A1V4KR06	A0A1V4KRJ7	USP domain-containing protein.	Uncharacterized protein.	0.567
AV530_001500	AV530_007865	A0A1V4KR06	A0A1V4KT68	USP domain-containing protein.	PSP domain-containing protein.	0.567
AV530_001500	AV530_008430	A0A1V4KR06	A0A1V4JHX4	USP domain-containing protein.	Uncharacterized protein.	0.807
AV530_001500	AV530_008557	A0A1V4KR06	A0A1V4L0M7	USP domain-containing protein.	Uncharacterized protein.	0.592
AV530_001500	AV530_008795	A0A1V4KR06	A0A1V4J3G1	USP domain-containing protein.	Tr-type G domain-containing protein.	0.807
AV530_001500	AV530_009473	A0A1V4KR06	A0A1V4JZ25	USP domain-containing protein.	Uncharacterized protein.	0.785
AV530_001500	AV530_010187	A0A1V4KR06	A0A1V4JR11	USP domain-containing protein.	EFG_IV domain-containing protein.	0.807
AV530_001500	AV530_014163	A0A1V4KR06	A0A1V4K7E2	USP domain-containing protein.	Uncharacterized protein.	0.581
AV530_001500	AV530_014164	A0A1V4KR06	A0A1V4K7D9	USP domain-containing protein.	Uncharacterized protein.	0.573
AV530_001500	AV530_017580	A0A1V4KR06	A0A1V4JTT6	USP domain-containing protein.	Uncharacterized protein.	0.901
AV530_001500	AV530_018094	A0A1V4KR06	A0A1V4KKY7	USP domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.667
AV530_001500	AV530_018652	A0A1V4KR06	A0A1V4JZU2	USP domain-containing protein.	Prp31_C domain-containing protein.	0.785
AV530_001500	DDX23	A0A1V4KR06	A0A1V4JVI6	USP domain-containing protein.	Putative ATP-dependent RNA helicase DDX23 isoform B.	0.866
AV530_001500	LSM3	A0A1V4KR06	A0A1V4JII2	USP domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.731
AV530_001500	LSM4	A0A1V4KR06	A0A1V4KQH8	USP domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.768
AV530_001500	LSM6	A0A1V4KR06	A0A1V4JUQ8	USP domain-containing protein.	U6 snRNA-associated Sm-like protein LSm6.	0.731
AV530_001500	LSM7	A0A1V4KR06	A0A1V4J7G8	USP domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.761
AV530_001500	LSM8	A0A1V4KR06	A0A1V4J9K2	USP domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.780
AV530_001500	PRPF3	A0A1V4KR06	A0A1V4KMI2	USP domain-containing protein.	U4/U6 small nuclear ribonucleoprotein Prp3.	0.825