23 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AV530_012142	Ubiquitin thioesterase OTUB1. (71 aa)
	AV530_003804	Uncharacterized protein. (832 aa)
	RECQL5	ATP-dependent DNA helicase Q5. (1011 aa)
	RMI2	RecQ-mediated genome instability protein 2. (139 aa)
	RNF169	E3 ubiquitin-protein ligase RNF169. (527 aa)
	ERCC6	DNA excision repair protein ERCC-6. (1554 aa)
	FAM35A	Protein FAM35A isoform A. (686 aa)
	UBR5	E3 ubiquitin-protein ligase UBR5 isoform A. (2807 aa)
	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1. (1997 aa)
	PARPBP	PCNA-interacting partner. (610 aa)
	RIF1	Telomere-associated protein RIF1 isoform B. (2311 aa)
	TRIP12	E3 ubiquitin-protein ligase TRIP12 isoform B. (1999 aa)
	FBXO18	F-box only protein 18. (1002 aa)
	MB21D1	Cyclic GMP-AMP synthase. (359 aa)
	OGG1	N-glycosylase/DNA lyase. (352 aa)
	UBQLN4	Ubiquilin-4 isoform B. (837 aa)
	TP53BP1	Tumor suppressor p53-binding protein 1 isoform A. (1799 aa)
	KLHL15	Kelch-like protein 15. (541 aa)
	AV530_004440	Uncharacterized protein. (366 aa)
	FANCB	Fanconi anemia group B protein. (774 aa)
	AV530_013101	Modulator of retrovirus infection-like protein. (131 aa)
	HELB	DNA helicase B. (1046 aa)
	HMGA2	High mobility group protein HMGI-C. (132 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_003804	FBXO18	A0A1V4KYN7	A0A1V4JWB4	Uncharacterized protein.	F-box only protein 18.	0.451
AV530_012142	TRIP12	A0A1V4K9R8	A0A1V4K3V8	Ubiquitin thioesterase OTUB1.	E3 ubiquitin-protein ligase TRIP12 isoform B.	0.577
AV530_012142	UBQLN4	A0A1V4K9R8	A0A1V4JIB1	Ubiquitin thioesterase OTUB1.	Ubiquilin-4 isoform B.	0.657
ERCC6	FBXO18	A0A1V4KKV1	A0A1V4JWB4	DNA excision repair protein ERCC-6.	F-box only protein 18.	0.443
ERCC6	OGG1	A0A1V4KKV1	A0A1V4JJN0	DNA excision repair protein ERCC-6.	N-glycosylase/DNA lyase.	0.480
ERCC6	TP53BP1	A0A1V4KKV1	A0A1V4JDJ9	DNA excision repair protein ERCC-6.	Tumor suppressor p53-binding protein 1 isoform A.	0.424
ERCC6	UBQLN4	A0A1V4KKV1	A0A1V4JIB1	DNA excision repair protein ERCC-6.	Ubiquilin-4 isoform B.	0.479
FAM35A	TP53BP1	A0A1V4KJN6	A0A1V4JDJ9	Protein FAM35A isoform A.	Tumor suppressor p53-binding protein 1 isoform A.	0.472
FANCB	UBQLN4	A0A1V4JBP7	A0A1V4JIB1	Fanconi anemia group B protein.	Ubiquilin-4 isoform B.	0.464
FBXO18	AV530_003804	A0A1V4JWB4	A0A1V4KYN7	F-box only protein 18.	Uncharacterized protein.	0.451
FBXO18	ERCC6	A0A1V4JWB4	A0A1V4KKV1	F-box only protein 18.	DNA excision repair protein ERCC-6.	0.443
FBXO18	HELB	A0A1V4JWB4	A0A1V4J9I3	F-box only protein 18.	DNA helicase B.	0.444
FBXO18	OGG1	A0A1V4JWB4	A0A1V4JJN0	F-box only protein 18.	N-glycosylase/DNA lyase.	0.606
FBXO18	RECQL5	A0A1V4JWB4	A0A1V4KVS5	F-box only protein 18.	ATP-dependent DNA helicase Q5.	0.957
FBXO18	TP53BP1	A0A1V4JWB4	A0A1V4JDJ9	F-box only protein 18.	Tumor suppressor p53-binding protein 1 isoform A.	0.703
FBXO18	TRIP12	A0A1V4JWB4	A0A1V4K3V8	F-box only protein 18.	E3 ubiquitin-protein ligase TRIP12 isoform B.	0.577
HELB	FBXO18	A0A1V4J9I3	A0A1V4JWB4	DNA helicase B.	F-box only protein 18.	0.444
OGG1	ERCC6	A0A1V4JJN0	A0A1V4KKV1	N-glycosylase/DNA lyase.	DNA excision repair protein ERCC-6.	0.480
OGG1	FBXO18	A0A1V4JJN0	A0A1V4JWB4	N-glycosylase/DNA lyase.	F-box only protein 18.	0.606
OGG1	RECQL5	A0A1V4JJN0	A0A1V4KVS5	N-glycosylase/DNA lyase.	ATP-dependent DNA helicase Q5.	0.474