33 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UBE2E3	Ubiquitin-conjugating enzyme E2 E3; Belongs to the ubiquitin-conjugating enzyme family. (207 aa)
	AV530_014525	UBIQUITIN_CONJUGAT_2 domain-containing protein. (195 aa)
	AV530_014526	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family. (217 aa)
	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2. (144 aa)
	UBE2W	Ubiquitin-conjugating enzyme E2 W. (151 aa)
	AV530_011500	UBIQUITIN_CONJUGAT_2 domain-containing protein. (91 aa)
	AV530_011499	Ubiquitin-conjugating enzyme E2 R2; Belongs to the ubiquitin-conjugating enzyme family. (202 aa)
	AV530_010277	Ubiquitin-conjugating enzyme E2 Q1-like. (317 aa)
	UBE2Q2	Ubiquitin-conjugating enzyme E2 Q2. (367 aa)
	UBE2K	Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
	BIRC6	Baculoviral IAP repeat-containing protein 6 isoform C. (4860 aa)
	UBE2J1	Ubiquitin-conjugating enzyme E2 J1 isoform A. (319 aa)
	AV530_013603	Ubiquitin-conjugating enzyme E2-18 kDa. (150 aa)
	UBE2Z	Ubiquitin-conjugating enzyme E2 Z. (401 aa)
	UBE2L3	Ubiquitin-conjugating enzyme E2 L3 isoform A; Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
	UBE2D3	Ubiquitin-conjugating enzyme E2 D3 isoform B; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	UBE2H	Ubiquitin-conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
	UBE2QL1	Ubiquitin-conjugating enzyme E2Q-like protein 1. (161 aa)
	AKTIP	AKT-interacting protein isoform A. (339 aa)
	UBE2G1	Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family. (211 aa)
	UBE2D1-2	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	UBE2F	NEDD8-conjugating enzyme UBE2F; Belongs to the ubiquitin-conjugating enzyme family. (324 aa)
	UBE2C	Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family. (179 aa)
	UBE2V1	Ubiquitin-conjugating enzyme E2 variant 1. (178 aa)
	UBE2N	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	UBE2J2	Ubiquitin-conjugating enzyme E2 J2. (356 aa)
	CDC34	Ubiquitin-conjugating enzyme E2 R1; Belongs to the ubiquitin-conjugating enzyme family. (235 aa)
	UBE2I	SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	UBE2B	Ubiquitin-conjugating enzyme E2 B isoform C; Belongs to the ubiquitin-conjugating enzyme family. (222 aa)
	UBE2D2	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family. (291 aa)
	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O. (1357 aa)
	UBE2T	Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family. (197 aa)
	UBE2A	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKTIP	UBE2H	A0A1V4K1L0	A0A1V4JVD4	AKT-interacting protein isoform A.	Ubiquitin-conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family.	0.513
AKTIP	UBE2W	A0A1V4K1L0	A0A1V4KGF6	AKT-interacting protein isoform A.	Ubiquitin-conjugating enzyme E2 W.	0.430
AV530_010277	AV530_011499	A0A1V4JBK5	A0A1V4J7T4	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 R2; Belongs to the ubiquitin-conjugating enzyme family.	0.612
AV530_010277	AV530_011500	A0A1V4JBK5	A0A1V4J7S8	Ubiquitin-conjugating enzyme E2 Q1-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.611
AV530_010277	AV530_013603	A0A1V4JBK5	A0A1V4JPY1	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2-18 kDa.	0.636
AV530_010277	AV530_014525	A0A1V4JBK5	A0A1V4KC24	Ubiquitin-conjugating enzyme E2 Q1-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.481
AV530_010277	AV530_014526	A0A1V4JBK5	A0A1V4KCE1	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family.	0.484
AV530_010277	BIRC6	A0A1V4JBK5	A0A1V4JJX5	Ubiquitin-conjugating enzyme E2 Q1-like.	Baculoviral IAP repeat-containing protein 6 isoform C.	0.525
AV530_010277	CDC34	A0A1V4JBK5	A0A1V4KQ64	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 R1; Belongs to the ubiquitin-conjugating enzyme family.	0.612
AV530_010277	UBE2A	A0A1V4JBK5	A0A1V4KYZ5	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.	0.664
AV530_010277	UBE2B	A0A1V4JBK5	A0A1V4KUV5	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 B isoform C; Belongs to the ubiquitin-conjugating enzyme family.	0.664
AV530_010277	UBE2C	A0A1V4JBK5	A0A1V4KKR5	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family.	0.614
AV530_010277	UBE2D1-2	A0A1V4JBK5	A0A1V4K6I4	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.559
AV530_010277	UBE2D2	A0A1V4JBK5	A0A1V4KUZ9	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	0.555
AV530_010277	UBE2D3	A0A1V4JBK5	A0A1V4JU84	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 D3 isoform B; Belongs to the ubiquitin-conjugating enzyme family.	0.555
AV530_010277	UBE2E3	A0A1V4JBK5	A0A1V4K8B1	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 E3; Belongs to the ubiquitin-conjugating enzyme family.	0.484
AV530_010277	UBE2F	A0A1V4JBK5	A0A1V4K717	Ubiquitin-conjugating enzyme E2 Q1-like.	NEDD8-conjugating enzyme UBE2F; Belongs to the ubiquitin-conjugating enzyme family.	0.685
AV530_010277	UBE2G1	A0A1V4JBK5	A0A1V4K4H2	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.	0.639
AV530_010277	UBE2H	A0A1V4JBK5	A0A1V4JVD4	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family.	0.725
AV530_010277	UBE2J1	A0A1V4JBK5	A0A1V4JMH1	Ubiquitin-conjugating enzyme E2 Q1-like.	Ubiquitin-conjugating enzyme E2 J1 isoform A.	0.704