STRINGSTRING
COPB2 COPB2 TOM1 TOM1 TIMM9 TIMM9 SNX5 SNX5 VPS28 VPS28 SEC23B SEC23B AV530_020140 AV530_020140 SNX6 SNX6 TRAM1 TRAM1 ENY2 ENY2 SEC23A SEC23A AP3M2 AP3M2 TIMM23 TIMM23 SEC24C SEC24C AP3M1 AP3M1 SAR1A SAR1A SYS1 SYS1 AV530_001655 AV530_001655 KPNA4 KPNA4 NMD3 NMD3 LIN7A LIN7A AP3B2 AP3B2 VPS35 VPS35 GOSR2 GOSR2 COPE COPE ATG4B ATG4B AP1M1 AP1M1 KDELR2 KDELR2 BBS7 BBS7 SEC24B SEC24B VPS29 VPS29 AP1B1 AP1B1 AP3D1 AP3D1 KPNA7 KPNA7 TOM1L2 TOM1L2 SAR1B SAR1B NUP85 NUP85 TOM1L1 TOM1L1 EXOC7 EXOC7 SEC24A SEC24A TIMM17A TIMM17A AP4B1 AP4B1 VPS41 VPS41 TIMM8A TIMM8A SDAD1 SDAD1 ATG4A ATG4A AP3B1 AP3B1 COPA COPA VPS37B VPS37B COPZ2 COPZ2 AV530_015432 AV530_015432 SNF8 SNF8 TIMM10 TIMM10 VPS37C VPS37C LIN7C LIN7C COPB1 COPB1 TSG101 TSG101 AP2A2 AP2A2 KPNA5 KPNA5 AP3S1 AP3S1 SFT2D1 SFT2D1 SEC13 SEC13 SEC61A1 SEC61A1 COPG1 COPG1 HNRNPA3 HNRNPA3 VPS37A VPS37A AP4E1 AP4E1 AV530_019446 AV530_019446 AP1S2 AP1S2 KPNA1 KPNA1 AV530_018610 AV530_018610 KDELR3 KDELR3 NUP107 NUP107 SEH1L SEH1L ARCN1 ARCN1 SEC61B SEC61B VPS11 VPS11 TIMM13 TIMM13 SEC16A SEC16A AV530_000352 AV530_000352 KPNA3 KPNA3 COG6 COG6 SFT2D2 SFT2D2 ATG3 ATG3 SEC61A2 SEC61A2 ATG4C ATG4C SEC16B SEC16B EXOC2 EXOC2 COPG2 COPG2 TIMM50 TIMM50 SEC24D SEC24D NUP93 NUP93 PHLPP2 PHLPP2 GOSR1 GOSR1 AP2B1 AP2B1 AV530_015248 AV530_015248 AP2M1 AP2M1 AP1S3 AP1S3 ATG9A ATG9A
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
COPB2Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (913 aa)
TOM1Target of Myb protein 1 isoform B; Belongs to the TOM1 family. (514 aa)
TIMM9Mitochondrial import inner membrane translocase subunit Tim9. (89 aa)
SNX5Sorting nexin; Involved in several stages of intracellular trafficking. (397 aa)
VPS28Vacuolar sorting-associated protein 28-like protein; Belongs to the VPS28 family. (864 aa)
SEC23BProtein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (767 aa)
AV530_020140Angiopoietin-related protein 1. (382 aa)
SNX6Sorting nexin; Involved in several stages of intracellular trafficking. (407 aa)
TRAM1Translocating chain-associated membrane protein; Belongs to the TRAM family. (374 aa)
ENY2Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (90 aa)
SEC23AProtein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (732 aa)
AP3M2AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family. (443 aa)
TIMM23Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (206 aa)
SEC24CProtein transport protein Sec24C isoform A. (1085 aa)
AP3M1AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (425 aa)
SAR1AGTP-binding protein SAR1a; Belongs to the small GTPase superfamily. SAR1 family. (198 aa)
SYS1Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)
AV530_001655Stress-associated endoplasmic reticulum protein; May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation. Belongs to the RAMP4 family. (66 aa)
KPNA4Importin subunit alpha; Belongs to the importin alpha family. (521 aa)
NMD360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (504 aa)
LIN7AProtein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (218 aa)
AP3B2AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1099 aa)
VPS35Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (796 aa)
GOSR2Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (229 aa)
COPECoatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family. (306 aa)
ATG4BCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (393 aa)
AP1M1AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (423 aa)
KDELR2ER lumen protein-retaining receptor. (212 aa)
BBS7Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (716 aa)
SEC24BProtein transport protein Sec24B isoform B. (1235 aa)
VPS29Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (186 aa)
AP1B1AP complex subunit beta. (1027 aa)
AP3D1AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (1162 aa)
KPNA7Importin subunit alpha; Belongs to the importin alpha family. (516 aa)
TOM1L2TOM1-like protein 2 isoform A; Belongs to the TOM1 family. (531 aa)
SAR1BGTP-binding protein SAR1b; Belongs to the small GTPase superfamily. SAR1 family. (198 aa)
NUP85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
TOM1L1TOM1-like protein 1; Belongs to the TOM1 family. (471 aa)
EXOC7Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (732 aa)
SEC24AProtein transport protein Sec24A. (1102 aa)
TIMM17AMitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (166 aa)
AP4B1AP complex subunit beta; Belongs to the adaptor complexes large subunit family. (739 aa)
VPS41Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (854 aa)
TIMM8AMitochondrial import inner membrane translocase subunit Tim8 A; Belongs to the small Tim family. (94 aa)
SDAD1Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (691 aa)
ATG4ACysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (412 aa)
AP3B1AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1100 aa)
COPACoatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1224 aa)
VPS37BVacuolar protein sorting-associated protein 37B. (286 aa)
COPZ2Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (198 aa)
AV530_015432Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (372 aa)
SNF8Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
TIMM10Mitochondrial import inner membrane translocase subunit Tim10. (66 aa)
VPS37CVacuolar protein sorting-associated protein 37C. (178 aa)
LIN7CProtein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (197 aa)
COPB1Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (953 aa)
TSG101Tumor susceptibility 101 protein. (391 aa)
AP2A2AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...] (951 aa)
KPNA5Importin subunit alpha; Belongs to the importin alpha family. (539 aa)
AP3S1AP-3 complex subunit sigma-1. (193 aa)
SFT2D1Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (213 aa)
SEC13SEC13-like protein; Belongs to the WD repeat SEC13 family. (306 aa)
SEC61A1Protein transport protein Sec61 subunit alpha. (476 aa)
COPG1Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (874 aa)
HNRNPA3Heterogeneous nuclear ribonucleoprotein A3 isoform C. (693 aa)
VPS37AVacuolar protein sorting-associated protein 37A. (391 aa)
AP4E1AP-4 complex subunit epsilon-1. (1150 aa)
AV530_019446AP-3 complex subunit sigma-2. (254 aa)
AP1S2AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (178 aa)
KPNA1Importin subunit alpha; Belongs to the importin alpha family. (550 aa)
AV530_018610MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (135 aa)
KDELR3ER lumen protein-retaining receptor. (214 aa)
NUP107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (919 aa)
SEH1LNucleoporin SEH1; Belongs to the WD repeat SEC13 family. (326 aa)
ARCN1Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (487 aa)
SEC61BProtein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (96 aa)
VPS11Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (927 aa)
TIMM13Mitochondrial import inner membrane translocase subunit Tim13 isoform A; Belongs to the small Tim family. (88 aa)
SEC16AProtein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (1580 aa)
AV530_000352Clat_adaptor_s domain-containing protein. (125 aa)
KPNA3Importin subunit alpha; Belongs to the importin alpha family. (540 aa)
COG6Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (647 aa)
SFT2D2Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (160 aa)
ATG3Autophagy-related protein 3. (338 aa)
SEC61A2Protein transport protein Sec61 subunit alpha. (476 aa)
ATG4CCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (429 aa)
SEC16BProtein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (1167 aa)
EXOC2Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (925 aa)
COPG2Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (871 aa)
TIMM50Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (213 aa)
SEC24DProtein transport protein Sec24D. (1034 aa)
NUP93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (819 aa)
PHLPP2PH domain leucine-rich repeat-containing protein phosphatase 2. (2143 aa)
GOSR1Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (248 aa)
AP2B1AP complex subunit beta. (951 aa)
AV530_015248Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family. (535 aa)
AP2M1AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family. (433 aa)
AP1S3AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (218 aa)
ATG9AAutophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (807 aa)
Your Current Organism:
Patagioenas fasciata
NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis
Server load: low (16%) [HD]