50 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AV530_007135	DNA_pol_E_B domain-containing protein. (226 aa)
	RCHY1	RING finger and CHY zinc finger domain-containing protein 1. (252 aa)
	TRIM47-2	Tripartite motif-containing protein 47. (642 aa)
	ATAD5	ATPase family AAA domain-containing protein 5. (1801 aa)
	TRIM47	Tripartite motif-containing protein 47. (520 aa)
	AV530_003076	Uncharacterized protein. (470 aa)
	AV530_003090	E3 ubiquitin/ISG15 ligase TRIM25. (646 aa)
	USP31	Ubiquitin carboxyl-terminal hydrolase 31 isoform A; Belongs to the peptidase C19 family. (1182 aa)
	MEIOB	Meiosis-specific with OB domain-containing protein isoform B. (493 aa)
	AV530_013466	Uncharacterized protein. (130 aa)
	REV3L	DNA polymerase zeta catalytic subunit isoform C. (3170 aa)
	SPRTN	SprT-like domain-containing protein Spartan. (407 aa)
	POLH	DNA polymerase eta. (689 aa)
	RPA2	Replication protein A subunit. (271 aa)
	AV530_011675	Uncharacterized protein. (68 aa)
	RFC1	Replication factor C subunit 1. (1150 aa)
	SPATA5L1	Spermatogenesis-associated protein 5-like protein 1. (787 aa)
	AV530_004707	CBFD_NFYB_HMF domain-containing protein. (70 aa)
	AV530_013146	USP domain-containing protein; Belongs to the peptidase C19 family. (394 aa)
	AV530_013147	Uncharacterized protein. (95 aa)
	AV530_011968	Uncharacterized protein; Belongs to the AAA ATPase family. (196 aa)
	SPATA5	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family. (687 aa)
	VCP	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (806 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
	KXD1	KxDL motif-containing protein 1. (190 aa)
	MAD2L2	Mitotic spindle assembly checkpoint protein MAD2B. (211 aa)
	POLD3	DNA polymerase delta subunit 3 isoform B. (405 aa)
	AV530_007031	Uncharacterized protein. (93 aa)
	RFC5	Replication factor C subunit 5. (255 aa)
	POLE	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2276 aa)
	REV1	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1254 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)
	AV530_017028	RCC1 and BTB domain-containing protein 2. (591 aa)
	RCBTB1	RCC1 and BTB domain-containing protein 1. (531 aa)
	POLE3	DNA polymerase epsilon subunit 3. (171 aa)
	POLK	DNA polymerase kappa isoform B. (944 aa)
	POLD2	DNA polymerase delta subunit 2. (407 aa)
	AV530_004093	Uncharacterized protein; Belongs to the AAA ATPase family. (131 aa)
	RPA3	Replication protein A subunit. (121 aa)
	RFC3	Replication factor C subunit 3. (356 aa)
	POLI	DNA polymerase iota. (633 aa)
	RFC4	Replication factor C subunit 4. (362 aa)
	AV530_013139	Uncharacterized protein. (305 aa)
	RFC2	Replication factor C subunit 2. (355 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (646 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)
	USP10	Ubiquitin carboxyl-terminal hydrolase. (789 aa)
	UFD1L	Ubiquitin fusion degradation 1-like protein. (307 aa)
	AV530_013603	Ubiquitin-conjugating enzyme E2-18 kDa. (150 aa)
	POLE2	DNA polymerase epsilon subunit 2. (315 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATAD5	AV530_004093	A0A1V4KX51	A0A1V4KCM7	ATPase family AAA domain-containing protein 5.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.488
ATAD5	AV530_004707	A0A1V4KX51	A0A1V4JZD4	ATPase family AAA domain-containing protein 5.	CBFD_NFYB_HMF domain-containing protein.	0.720
ATAD5	AV530_007031	A0A1V4KX51	A0A1V4KN60	ATPase family AAA domain-containing protein 5.	Uncharacterized protein.	0.759
ATAD5	AV530_007135	A0A1V4KX51	A0A1V4L075	ATPase family AAA domain-containing protein 5.	DNA_pol_E_B domain-containing protein.	0.780
ATAD5	AV530_011675	A0A1V4KX51	A0A1V4JGU3	ATPase family AAA domain-containing protein 5.	Uncharacterized protein.	0.488
ATAD5	AV530_011968	A0A1V4KX51	A0A1V4JVW0	ATPase family AAA domain-containing protein 5.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.488
ATAD5	AV530_013139	A0A1V4KX51	A0A1V4K4Q5	ATPase family AAA domain-containing protein 5.	Uncharacterized protein.	0.488
ATAD5	AV530_013146	A0A1V4KX51	A0A1V4JXI1	ATPase family AAA domain-containing protein 5.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.436
ATAD5	AV530_013147	A0A1V4KX51	A0A1V4JVX3	ATPase family AAA domain-containing protein 5.	Uncharacterized protein.	0.436
ATAD5	AV530_013466	A0A1V4KX51	A0A1V4JPW5	ATPase family AAA domain-containing protein 5.	Uncharacterized protein.	0.484
ATAD5	AV530_013603	A0A1V4KX51	A0A1V4JPY1	ATPase family AAA domain-containing protein 5.	Ubiquitin-conjugating enzyme E2-18 kDa.	0.592
ATAD5	MAD2L2	A0A1V4KX51	A0A1V4KP15	ATPase family AAA domain-containing protein 5.	Mitotic spindle assembly checkpoint protein MAD2B.	0.658
ATAD5	MEIOB	A0A1V4KX51	A0A1V4KSK9	ATPase family AAA domain-containing protein 5.	Meiosis-specific with OB domain-containing protein isoform B.	0.838
ATAD5	PCNA	A0A1V4KX51	A0A1V4KR21	ATPase family AAA domain-containing protein 5.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.984
ATAD5	POLD2	A0A1V4KX51	A0A1V4KHA5	ATPase family AAA domain-containing protein 5.	DNA polymerase delta subunit 2.	0.719
ATAD5	POLD3	A0A1V4KX51	A0A1V4KN75	ATPase family AAA domain-containing protein 5.	DNA polymerase delta subunit 3 isoform B.	0.758
ATAD5	POLE	A0A1V4KX51	A0A1V4J3J5	ATPase family AAA domain-containing protein 5.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.903
ATAD5	POLE2	A0A1V4KX51	A0A1V4L0K5	ATPase family AAA domain-containing protein 5.	DNA polymerase epsilon subunit 2.	0.780
ATAD5	POLE3	A0A1V4KX51	A0A1V4J720	ATPase family AAA domain-containing protein 5.	DNA polymerase epsilon subunit 3.	0.788
ATAD5	POLH	A0A1V4KX51	A0A1V4JK33	ATPase family AAA domain-containing protein 5.	DNA polymerase eta.	0.705