19 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AV530_013970	HECT domain-containing protein. (156 aa)
	NEURL1B	E3 ubiquitin-protein ligase NEURL1B. (556 aa)
	NEURL1	E3 ubiquitin-protein ligase NEURL1 isoform B. (572 aa)
	MIB1	E3 ubiquitin-protein ligase MIB1 isoform B. (1006 aa)
	AV530_012204	Uncharacterized protein. (153 aa)
	AV530_004803	Uncharacterized protein. (541 aa)
	AV530_009911	EGF-like domain-containing protein. (92 aa)
	JAG2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1181 aa)
	DNER	Delta and Notch-like epidermal growth factor-related receptor isoform A. (667 aa)
	DTX2	Putative E3 ubiquitin-protein ligase DTX2 isoform B. (627 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)
	AV530_008992	HECT domain-containing protein. (138 aa)
	DTX1	E3 ubiquitin-protein ligase DTX1. (565 aa)
	DTX4	E3 ubiquitin-protein ligase DTX4. (616 aa)
	AV530_005776	Uncharacterized protein. (156 aa)
	AV530_014050	DTC domain-containing protein. (97 aa)
	CNTN1	Contactin-1. (1004 aa)
	NOTCH1	Neurogenic locus notch-like protein 1 isoform B. (2550 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_004803	AV530_005776	A0A1V4KDZ8	A0A1V4JML0	Uncharacterized protein.	Uncharacterized protein.	0.489
AV530_004803	AV530_012204	A0A1V4KDZ8	A0A1V4KEX9	Uncharacterized protein.	Uncharacterized protein.	0.860
AV530_004803	AV530_013970	A0A1V4KDZ8	A0A1V4KY04	Uncharacterized protein.	HECT domain-containing protein.	0.853
AV530_004803	AV530_014050	A0A1V4KDZ8	A0A1V4JK87	Uncharacterized protein.	DTC domain-containing protein.	0.713
AV530_004803	DTX4	A0A1V4KDZ8	A0A1V4JPZ9	Uncharacterized protein.	E3 ubiquitin-protein ligase DTX4.	0.713
AV530_004803	NOTCH1	A0A1V4KDZ8	A0A1V4J6M3	Uncharacterized protein.	Neurogenic locus notch-like protein 1 isoform B.	0.489
AV530_004803	RPS27A	A0A1V4KDZ8	A0A1V4IG00	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.881
AV530_004803	UBC	A0A1V4KDZ8	A0A1V4K2F8	Uncharacterized protein.	Polyubiquitin-C isoform A.	0.855
AV530_005776	AV530_004803	A0A1V4JML0	A0A1V4KDZ8	Uncharacterized protein.	Uncharacterized protein.	0.489
AV530_005776	AV530_008992	A0A1V4JML0	A0A1V4JV29	Uncharacterized protein.	HECT domain-containing protein.	0.489
AV530_005776	AV530_009911	A0A1V4JML0	A0A1V4KAN0	Uncharacterized protein.	EGF-like domain-containing protein.	0.538
AV530_005776	AV530_012204	A0A1V4JML0	A0A1V4KEX9	Uncharacterized protein.	Uncharacterized protein.	0.489
AV530_005776	AV530_013970	A0A1V4JML0	A0A1V4KY04	Uncharacterized protein.	HECT domain-containing protein.	0.489
AV530_005776	AV530_014050	A0A1V4JML0	A0A1V4JK87	Uncharacterized protein.	DTC domain-containing protein.	0.890
AV530_005776	DNER	A0A1V4JML0	A0A1V4K3S2	Uncharacterized protein.	Delta and Notch-like epidermal growth factor-related receptor isoform A.	0.440
AV530_005776	DTX1	A0A1V4JML0	A0A1V4JSP1	Uncharacterized protein.	E3 ubiquitin-protein ligase DTX1.	0.730
AV530_005776	DTX2	A0A1V4JML0	A0A1V4K2P7	Uncharacterized protein.	Putative E3 ubiquitin-protein ligase DTX2 isoform B.	0.829
AV530_005776	DTX4	A0A1V4JML0	A0A1V4JPZ9	Uncharacterized protein.	E3 ubiquitin-protein ligase DTX4.	0.890
AV530_005776	JAG2	A0A1V4JML0	A0A1V4KAH5	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.965
AV530_005776	NEURL1	A0A1V4JML0	A0A1V4KIR6	Uncharacterized protein.	E3 ubiquitin-protein ligase NEURL1 isoform B.	0.446