17 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PARP1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like isoform A. (1253 aa)
	TGIF2	Homeobox protein TGIF2. (262 aa)
	SMAD3	Mothers against decapentaplegic homolog. (426 aa)
	AV530_007773	MH1 domain-containing protein. (284 aa)
	AV530_007772	MH2 domain-containing protein. (174 aa)
	AV530_007771	MH2 domain-containing protein. (141 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)
	ATP1B4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (353 aa)
	SKI	Ski oncogene. (359 aa)
	AV530_011239	Uncharacterized protein. (218 aa)
	TGIF1	Homeobox protein TGIF1. (269 aa)
	SNW1	SNW domain-containing protein 1. (538 aa)
	SMAD4	Mothers against decapentaplegic homolog. (362 aa)
	NCOR1	Nuclear receptor corepressor 1 isoform A. (2558 aa)
	SKIL	Ski-like protein. (658 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP1B4	SNW1	A0A1V4KZ93	A0A1V4KAV4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	SNW domain-containing protein 1.	0.888
AV530_007771	AV530_011239	A0A1V4JA70	A0A1V4KNK3	MH2 domain-containing protein.	Uncharacterized protein.	0.804
AV530_007771	NCOR1	A0A1V4JA70	A0A1V4K3W1	MH2 domain-containing protein.	Nuclear receptor corepressor 1 isoform A.	0.509
AV530_007771	NEDD4L	A0A1V4JA70	A0A1V4JGQ5	MH2 domain-containing protein.	E3 ubiquitin-protein ligase NEDD4-like isoform A.	0.764
AV530_007771	PARP1	A0A1V4JA70	A0A1V4JJ34	MH2 domain-containing protein.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.614
AV530_007771	RPS27A	A0A1V4JA70	A0A1V4IG00	MH2 domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.627
AV530_007771	SKI	A0A1V4JA70	A0A1V4KNP7	MH2 domain-containing protein.	Ski oncogene.	0.804
AV530_007771	SKIL	A0A1V4JA70	A0A1V4K3T6	MH2 domain-containing protein.	Ski-like protein.	0.822
AV530_007771	SMAD4	A0A1V4JA70	A0A1V4K545	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.937
AV530_007771	SNW1	A0A1V4JA70	A0A1V4KAV4	MH2 domain-containing protein.	SNW domain-containing protein 1.	0.404
AV530_007771	TGIF1	A0A1V4JA70	A0A1V4KG74	MH2 domain-containing protein.	Homeobox protein TGIF1.	0.700
AV530_007771	TGIF2	A0A1V4JA70	A0A1V4JG35	MH2 domain-containing protein.	Homeobox protein TGIF2.	0.700
AV530_007771	UBC	A0A1V4JA70	A0A1V4K2F8	MH2 domain-containing protein.	Polyubiquitin-C isoform A.	0.620
AV530_007772	AV530_007773	A0A1V4JAM5	A0A1V4JAN9	MH2 domain-containing protein.	MH1 domain-containing protein.	0.841
AV530_007772	AV530_011239	A0A1V4JAM5	A0A1V4KNK3	MH2 domain-containing protein.	Uncharacterized protein.	0.804
AV530_007772	NCOR1	A0A1V4JAM5	A0A1V4K3W1	MH2 domain-containing protein.	Nuclear receptor corepressor 1 isoform A.	0.509
AV530_007772	NEDD4L	A0A1V4JAM5	A0A1V4JGQ5	MH2 domain-containing protein.	E3 ubiquitin-protein ligase NEDD4-like isoform A.	0.764
AV530_007772	PARP1	A0A1V4JAM5	A0A1V4JJ34	MH2 domain-containing protein.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.614
AV530_007772	RPS27A	A0A1V4JAM5	A0A1V4IG00	MH2 domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.627
AV530_007772	SKI	A0A1V4JAM5	A0A1V4KNP7	MH2 domain-containing protein.	Ski oncogene.	0.804