14 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PSME4	Proteasome activator complex subunit 4 isoform A. (1824 aa)
	AV530_012300	26S protease regulatory subunit 6B-like. (85 aa)
	PSMA1	Proteasome subunit alpha type. (261 aa)
	PSMD1	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (944 aa)
	PSMD10	26S proteasome non-ATPase regulatory subunit 10. (226 aa)
	KXD1	KxDL motif-containing protein 1. (190 aa)
	AV530_014876	CSN8_PSD8_EIF3K domain-containing protein. (75 aa)
	RFWD2	E3 ubiquitin-protein ligase RFWD2 isoform A. (639 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)
	PSMD11	26S proteasome non-ATPase regulatory subunit 11. (544 aa)
	ATM	Non-specific serine/threonine protein kinase. (3037 aa)
	PSMC1	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (440 aa)
	PSMA7	Proteasome subunit alpha type. (248 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATM	RFWD2	A0A1V4KA19	A0A1V4JX95	Non-specific serine/threonine protein kinase.	E3 ubiquitin-protein ligase RFWD2 isoform A.	0.699
ATM	RPS27A	A0A1V4KA19	A0A1V4IG00	Non-specific serine/threonine protein kinase.	Ubiquitin-40S ribosomal protein S27a.	0.632
ATM	UBC	A0A1V4KA19	A0A1V4K2F8	Non-specific serine/threonine protein kinase.	Polyubiquitin-C isoform A.	0.661
AV530_012300	AV530_014876	A0A1V4JKJ9	A0A1V4L198	26S protease regulatory subunit 6B-like.	CSN8_PSD8_EIF3K domain-containing protein.	0.999
AV530_012300	PSMA1	A0A1V4JKJ9	A0A1V4JNV2	26S protease regulatory subunit 6B-like.	Proteasome subunit alpha type.	0.996
AV530_012300	PSMA7	A0A1V4JKJ9	A0A1V4KKG5	26S protease regulatory subunit 6B-like.	Proteasome subunit alpha type.	0.998
AV530_012300	PSMC1	A0A1V4JKJ9	A0A1V4KAT2	26S protease regulatory subunit 6B-like.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
AV530_012300	PSMD1	A0A1V4JKJ9	A0A1V4KM85	26S protease regulatory subunit 6B-like.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.996
AV530_012300	PSMD10	A0A1V4JKJ9	A0A1V4KZ57	26S protease regulatory subunit 6B-like.	26S proteasome non-ATPase regulatory subunit 10.	0.989
AV530_012300	PSMD11	A0A1V4JKJ9	A0A1V4K367	26S protease regulatory subunit 6B-like.	26S proteasome non-ATPase regulatory subunit 11.	0.998
AV530_012300	PSME4	A0A1V4JKJ9	A0A1V4IG24	26S protease regulatory subunit 6B-like.	Proteasome activator complex subunit 4 isoform A.	0.861
AV530_012300	RFWD2	A0A1V4JKJ9	A0A1V4JX95	26S protease regulatory subunit 6B-like.	E3 ubiquitin-protein ligase RFWD2 isoform A.	0.562
AV530_012300	RPS27A	A0A1V4JKJ9	A0A1V4IG00	26S protease regulatory subunit 6B-like.	Ubiquitin-40S ribosomal protein S27a.	0.970
AV530_012300	UBC	A0A1V4JKJ9	A0A1V4K2F8	26S protease regulatory subunit 6B-like.	Polyubiquitin-C isoform A.	0.972
AV530_014876	AV530_012300	A0A1V4L198	A0A1V4JKJ9	CSN8_PSD8_EIF3K domain-containing protein.	26S protease regulatory subunit 6B-like.	0.999
AV530_014876	PSMA1	A0A1V4L198	A0A1V4JNV2	CSN8_PSD8_EIF3K domain-containing protein.	Proteasome subunit alpha type.	0.997
AV530_014876	PSMA7	A0A1V4L198	A0A1V4KKG5	CSN8_PSD8_EIF3K domain-containing protein.	Proteasome subunit alpha type.	0.998
AV530_014876	PSMC1	A0A1V4L198	A0A1V4KAT2	CSN8_PSD8_EIF3K domain-containing protein.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.998
AV530_014876	PSMD1	A0A1V4L198	A0A1V4KM85	CSN8_PSD8_EIF3K domain-containing protein.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.998
AV530_014876	PSMD10	A0A1V4L198	A0A1V4KZ57	CSN8_PSD8_EIF3K domain-containing protein.	26S proteasome non-ATPase regulatory subunit 10.	0.976