45 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AV530_006703	Transducin-like enhancer protein 1. (714 aa)
	APC2	Adenomatous polyposis coli protein 2; Belongs to the universal ribosomal protein uS19 family. (2562 aa)
	KXD1	KxDL motif-containing protein 1. (190 aa)
	SOX21	Transcription factor SOX-21. (240 aa)
	AV530_006702	Uncharacterized protein. (227 aa)
	SOX8	Transcription factor SOX-8 isoform A. (470 aa)
	SOX30	Transcription factor SOX-30. (658 aa)
	AV530_014703	Uncharacterized protein. (147 aa)
	SOX7	Transcription factor SOX-7. (288 aa)
	SOX1	Transcription factor SOX-1 isoform B. (366 aa)
	XPO1	Exportin-1. (999 aa)
	ZBTB44	Zinc finger and BTB domain-containing protein 44 isoform B. (646 aa)
	CBY1	Chibby-like protein 1. (126 aa)
	SOX10	Transcription factor SOX-10. (498 aa)
	TLE1	Transducin-like enhancer protein 1. (772 aa)
	AKT1	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (480 aa)
	CTNNB1	Catenin beta-1. (748 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)
	AV530_019789	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (227 aa)
	LEF1	Lymphoid enhancer-binding factor 1 isoform A. (412 aa)
	SOX6	Transcription factor SOX-6 isoform B. (994 aa)
	SOX11	Transcription factor SOX. (403 aa)
	APC	Adenomatous polyposis coli protein isoform B. (2850 aa)
	SOX4	Transcription factor SOX-4. (164 aa)
	AV530_018631	Uncharacterized protein. (91 aa)
	AV530_008896	Uncharacterized protein. (290 aa)
	TLE3	Transducin-like enhancer protein 3 isoform A. (779 aa)
	CTBP1	C-terminal-binding protein 1 isoform C; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (458 aa)
	SOX5	Transcription factor SOX-5 isoform A. (494 aa)
	SOX9	Transcription factor SOX-9. (400 aa)
	TCF7	Transcription factor 7 isoform A. (379 aa)
	AV530_019053	Transcription factor SOX-13. (691 aa)
	AV530_003671	Transcription factor SOX-3. (316 aa)
	XIAP	E3 ubiquitin-protein ligase XIAP isoform A. (574 aa)
	AV530_007002	Uncharacterized protein. (77 aa)
	TCF7L2	Transcription factor 7-like 2 isoform C. (522 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)
	DBNL	Drebrin-like protein. (636 aa)
	YWHAZ	14-3-3 protein zeta/delta; Belongs to the 14-3-3 family. (373 aa)
	BTRC	F-box/WD repeat-containing protein 1A. (596 aa)
	AV530_018028	HMG box domain-containing protein. (258 aa)
	SOX18	Transcription factor SOX-18. (377 aa)
	CTNNBIP1	Beta-catenin-interacting protein 1. (204 aa)
	AV530_006701	TLE_N domain-containing protein. (325 aa)
	TLE4	Transducin-like enhancer protein 4 isoform B. (863 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT1	APC	A0A1V4KAM6	A0A1V4JKE8	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Adenomatous polyposis coli protein isoform B.	0.510
AKT1	APC2	A0A1V4KAM6	A0A1V4KQ89	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Adenomatous polyposis coli protein 2; Belongs to the universal ribosomal protein uS19 family.	0.509
AKT1	BTRC	A0A1V4KAM6	A0A1V4KIW0	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	F-box/WD repeat-containing protein 1A.	0.504
AKT1	CTNNB1	A0A1V4KAM6	A0A1V4K776	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Catenin beta-1.	0.753
AKT1	UBC	A0A1V4KAM6	A0A1V4K2F8	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Polyubiquitin-C isoform A.	0.406
AKT1	XIAP	A0A1V4KAM6	A0A1V4KZC2	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	E3 ubiquitin-protein ligase XIAP isoform A.	0.524
AKT1	YWHAZ	A0A1V4KAM6	A0A1V4KH01	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	14-3-3 protein zeta/delta; Belongs to the 14-3-3 family.	0.534
APC	AKT1	A0A1V4JKE8	A0A1V4KAM6	Adenomatous polyposis coli protein isoform B.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.510
APC	AV530_014703	A0A1V4JKE8	A0A1V4J5B1	Adenomatous polyposis coli protein isoform B.	Uncharacterized protein.	0.806
APC	AV530_019789	A0A1V4JKE8	A0A1V4JV28	Adenomatous polyposis coli protein isoform B.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.510
APC	BTRC	A0A1V4JKE8	A0A1V4KIW0	Adenomatous polyposis coli protein isoform B.	F-box/WD repeat-containing protein 1A.	0.901
APC	CTBP1	A0A1V4JKE8	A0A1V4JF02	Adenomatous polyposis coli protein isoform B.	C-terminal-binding protein 1 isoform C; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.826
APC	CTNNB1	A0A1V4JKE8	A0A1V4K776	Adenomatous polyposis coli protein isoform B.	Catenin beta-1.	0.994
APC	CTNNBIP1	A0A1V4JKE8	A0A1V4KNZ0	Adenomatous polyposis coli protein isoform B.	Beta-catenin-interacting protein 1.	0.833
APC	DBNL	A0A1V4JKE8	A0A1V4KHD3	Adenomatous polyposis coli protein isoform B.	Drebrin-like protein.	0.806
APC	LEF1	A0A1V4JKE8	A0A1V4JU60	Adenomatous polyposis coli protein isoform B.	Lymphoid enhancer-binding factor 1 isoform A.	0.866
APC	TCF7	A0A1V4JKE8	A0A1V4KW82	Adenomatous polyposis coli protein isoform B.	Transcription factor 7 isoform A.	0.866
APC	TCF7L2	A0A1V4JKE8	A0A1V4KII2	Adenomatous polyposis coli protein isoform B.	Transcription factor 7-like 2 isoform C.	0.806
APC	UBC	A0A1V4JKE8	A0A1V4K2F8	Adenomatous polyposis coli protein isoform B.	Polyubiquitin-C isoform A.	0.649
APC2	AKT1	A0A1V4KQ89	A0A1V4KAM6	Adenomatous polyposis coli protein 2; Belongs to the universal ribosomal protein uS19 family.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.509