41 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTPN6	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (608 aa)
	AV530_012552	Granulocyte-macrophage colony-stimulating factor receptor subunit alpha. (288 aa)
	AV530_012550	Fibronectin type-III domain-containing protein. (310 aa)
	AV530_012551	Granulocyte-macrophage colony-stimulating factor receptor subunit alpha. (304 aa)
	AV530_001374	Signal transducer and activator of transcription. (787 aa)
	CRKL	Crk-like protein. (303 aa)
	PTPN11	Tyrosine-protein phosphatase non-receptor type 11. (581 aa)
	PIK3R3	Phosphatidylinositol 3-kinase regulatory subunit gamma isoform A. (731 aa)
	SHC1	SHC-transforming protein 1. (323 aa)
	AV530_000460	Uncharacterized protein. (250 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)
	CRK	Adapter molecule crk. (305 aa)
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1053 aa)
	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform; Belongs to the PI3/PI4-kinase family. (1118 aa)
	INPP5D	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1. (1215 aa)
	IL5RA	Interleukin-5 receptor subunit alpha. (352 aa)
	YES1	Tyrosine-protein kinase. (554 aa)
	LYN	Tyrosine-protein kinase. (557 aa)
	YWHAZ	14-3-3 protein zeta/delta; Belongs to the 14-3-3 family. (373 aa)
	HCK	Tyrosine-protein kinase. (504 aa)
	GAB2	GRB2-associated-binding protein 2. (680 aa)
	AV530_011288	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	PIK3CD	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	JAK3	Tyrosine-protein kinase. (1174 aa)
	PIK3R2	Phosphatidylinositol 3-kinase regulatory subunit beta. (727 aa)
	GRB2	Growth factor receptor-bound protein 2. (217 aa)
	AV530_003597	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2-like. (1195 aa)
	IL2RG	Cytokine receptor common subunit gamma. (514 aa)
	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2. (1139 aa)
	PIK3R1	Phosphatidylinositol 3-kinase regulatory subunit alpha. (746 aa)
	SYK	Tyrosine-protein kinase SYK. (652 aa)
	RAPGEF1	Rap guanine nucleotide exchange factor 1 isoform B. (1277 aa)
	CBL	E3 ubiquitin-protein ligase CBL. (903 aa)
	JAK2	Tyrosine-protein kinase. (1076 aa)
	SOS1	Son of sevenless-like protein 1. (1345 aa)
	AV530_012935	Fibronectin type-III domain-containing protein. (643 aa)
	IL2RB	Interleukin-2 receptor subunit beta. (624 aa)
	AV530_009181	PID domain-containing protein. (305 aa)
	CSF2RB	Cytokine receptor common subunit beta. (572 aa)
	AV530_012553	Granulocyte-macrophage colony-stimulating factor receptor subunit alpha. (383 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_000460	AV530_001374	A0A1V4K0S3	A0A1V4JQT0	Uncharacterized protein.	Signal transducer and activator of transcription.	0.908
AV530_000460	AV530_003597	A0A1V4K0S3	A0A1V4KY73	Uncharacterized protein.	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2-like.	0.601
AV530_000460	AV530_009181	A0A1V4K0S3	A0A1V4JAQ0	Uncharacterized protein.	PID domain-containing protein.	0.436
AV530_000460	AV530_012550	A0A1V4K0S3	A0A1V4JBP4	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.464
AV530_000460	AV530_012551	A0A1V4K0S3	A0A1V4JBP6	Uncharacterized protein.	Granulocyte-macrophage colony-stimulating factor receptor subunit alpha.	0.586
AV530_000460	AV530_012552	A0A1V4K0S3	A0A1V4JBF9	Uncharacterized protein.	Granulocyte-macrophage colony-stimulating factor receptor subunit alpha.	0.586
AV530_000460	AV530_012553	A0A1V4K0S3	A0A1V4JAZ8	Uncharacterized protein.	Granulocyte-macrophage colony-stimulating factor receptor subunit alpha.	0.586
AV530_000460	AV530_012935	A0A1V4K0S3	A0A1V4J9I9	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.476
AV530_000460	CSF2RB	A0A1V4K0S3	A0A1V4JAT1	Uncharacterized protein.	Cytokine receptor common subunit beta.	0.476
AV530_000460	GRB2	A0A1V4K0S3	A0A1V4KW39	Uncharacterized protein.	Growth factor receptor-bound protein 2.	0.608
AV530_000460	HCK	A0A1V4K0S3	A0A1V4KKM3	Uncharacterized protein.	Tyrosine-protein kinase.	0.545
AV530_000460	IL2RB	A0A1V4K0S3	A0A1V4JA12	Uncharacterized protein.	Interleukin-2 receptor subunit beta.	0.985
AV530_000460	IL5RA	A0A1V4K0S3	A0A1V4K991	Uncharacterized protein.	Interleukin-5 receptor subunit alpha.	0.495
AV530_000460	INPP5D	A0A1V4K0S3	A0A1V4K4F0	Uncharacterized protein.	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1.	0.432
AV530_000460	INPPL1	A0A1V4K0S3	A0A1V4L084	Uncharacterized protein.	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2.	0.601
AV530_000460	JAK2	A0A1V4K0S3	A0A1V4J8Q4	Uncharacterized protein.	Tyrosine-protein kinase.	0.857
AV530_000460	JAK3	A0A1V4K0S3	A0A1V4KQA1	Uncharacterized protein.	Tyrosine-protein kinase.	0.857
AV530_000460	LYN	A0A1V4K0S3	A0A1V4KGA9	Uncharacterized protein.	Tyrosine-protein kinase.	0.460
AV530_000460	PIK3CD	A0A1V4K0S3	A0A1V4KNZ2	Uncharacterized protein.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.566
AV530_000460	SHC1	A0A1V4K0S3	A0A1V4JZI7	Uncharacterized protein.	SHC-transforming protein 1.	0.436