25 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KXD1	KxDL motif-containing protein 1. (190 aa)
	UIMC1	BRCA1-A complex subunit RAP80 isoform C. (807 aa)
	BRCC3	Lys-63-specific deubiquitinase BRCC36 isoform B. (261 aa)
	STAMBP	STAM-binding protein. (756 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)
	AV530_016748	Histone H2A; Belongs to the histone H2A family. (139 aa)
	AV530_013817	Histone H2A; Belongs to the histone H2A family. (143 aa)
	ANKRD12	Ankyrin repeat domain-containing protein 12. (1993 aa)
	EP300	Histone acetyltransferase p300. (1778 aa)
	BRE	BRCA1-A complex subunit BRE. (495 aa)
	RNH1	Ribonuclease inhibitor. (502 aa)
	AV530_013536	NACHT, LRR and PYD domains-containing protein 12. (958 aa)
	BRCA1	Breast cancer type 1 susceptibility protein. (1749 aa)
	FAM175A	BRCA1-A complex subunit Abraxas. (403 aa)
	MYSM1	Histone H2A deubiquitinase MYSM1. (831 aa)
	MPND	MPN domain-containing protein. (499 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)
	PSMD14	26S proteasome non-ATPase regulatory subunit 14. (374 aa)
	BARD1	BRCA1-associated RING domain protein 1. (787 aa)
	AV530_009844	Uncharacterized protein. (98 aa)
	STAM	Signal transducing adapter molecule 1. (544 aa)
	KAT2B	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (772 aa)
	FAM175B	BRISC complex subunit Abro1. (414 aa)
	STAMBPL1	AMSH-like protease. (453 aa)
	BABAM1	BRISC and BRCA1-A complex member 1. (177 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD12	AV530_009844	A0A1V4J919	A0A1V4KAK5	Ankyrin repeat domain-containing protein 12.	Uncharacterized protein.	0.699
ANKRD12	AV530_013817	A0A1V4J919	A0A1V4J805	Ankyrin repeat domain-containing protein 12.	Histone H2A; Belongs to the histone H2A family.	0.583
ANKRD12	AV530_016748	A0A1V4J919	A0A1V4J3L9	Ankyrin repeat domain-containing protein 12.	Histone H2A; Belongs to the histone H2A family.	0.583
ANKRD12	BABAM1	A0A1V4J919	A0A1V4KQF5	Ankyrin repeat domain-containing protein 12.	BRISC and BRCA1-A complex member 1.	0.753
ANKRD12	BARD1	A0A1V4J919	A0A1V4K6Z7	Ankyrin repeat domain-containing protein 12.	BRCA1-associated RING domain protein 1.	0.416
ANKRD12	BRCA1	A0A1V4J919	A0A1V4JS50	Ankyrin repeat domain-containing protein 12.	Breast cancer type 1 susceptibility protein.	0.985
ANKRD12	BRCC3	A0A1V4J919	A0A1V4KYT2	Ankyrin repeat domain-containing protein 12.	Lys-63-specific deubiquitinase BRCC36 isoform B.	0.813
ANKRD12	BRE	A0A1V4J919	A0A1V4JJP4	Ankyrin repeat domain-containing protein 12.	BRCA1-A complex subunit BRE.	0.772
ANKRD12	MYSM1	A0A1V4J919	A0A1V4JXZ8	Ankyrin repeat domain-containing protein 12.	Histone H2A deubiquitinase MYSM1.	0.449
ANKRD12	RPS27A	A0A1V4J919	A0A1V4IG00	Ankyrin repeat domain-containing protein 12.	Ubiquitin-40S ribosomal protein S27a.	0.840
ANKRD12	UBC	A0A1V4J919	A0A1V4K2F8	Ankyrin repeat domain-containing protein 12.	Polyubiquitin-C isoform A.	0.830
ANKRD12	UIMC1	A0A1V4J919	A0A1V4KUB8	Ankyrin repeat domain-containing protein 12.	BRCA1-A complex subunit RAP80 isoform C.	0.699
AV530_009844	ANKRD12	A0A1V4KAK5	A0A1V4J919	Uncharacterized protein.	Ankyrin repeat domain-containing protein 12.	0.699
AV530_009844	AV530_013817	A0A1V4KAK5	A0A1V4J805	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.518
AV530_009844	AV530_016748	A0A1V4KAK5	A0A1V4J3L9	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.513
AV530_009844	BABAM1	A0A1V4KAK5	A0A1V4KQF5	Uncharacterized protein.	BRISC and BRCA1-A complex member 1.	0.989
AV530_009844	BARD1	A0A1V4KAK5	A0A1V4K6Z7	Uncharacterized protein.	BRCA1-associated RING domain protein 1.	0.904
AV530_009844	BRCA1	A0A1V4KAK5	A0A1V4JS50	Uncharacterized protein.	Breast cancer type 1 susceptibility protein.	0.977
AV530_009844	BRCC3	A0A1V4KAK5	A0A1V4KYT2	Uncharacterized protein.	Lys-63-specific deubiquitinase BRCC36 isoform B.	0.980
AV530_009844	BRE	A0A1V4KAK5	A0A1V4JJP4	Uncharacterized protein.	BRCA1-A complex subunit BRE.	0.980