STRINGSTRING
BRE BRE PARP1 PARP1 SLF1 SLF1 AV530_008416 AV530_008416 NARS NARS AV530_017375 AV530_017375 RFC1 RFC1 WHSC1 WHSC1 POLN POLN AV530_000729 AV530_000729 TIPIN TIPIN BLM BLM TP53BP1 TP53BP1 SIRT7 SIRT7 TIMELESS TIMELESS POLQ POLQ RHNO1 RHNO1 AV530_013085 AV530_013085 AV530_013083 AV530_013083 AV530_013074 AV530_013074 ANKRD12 ANKRD12 POLE3 POLE3 ABL1 ABL1 CHEK1 CHEK1 RCBTB1 RCBTB1 TDRD3 TDRD3 AV530_017028 AV530_017028 POLE POLE RPS27A RPS27A MRE11A MRE11A POLK POLK POLE2 POLE2 AV530_007135 AV530_007135 RECQL4 RECQL4 WRN WRN AV530_000249 AV530_000249 BRCC3 BRCC3 CDK3 CDK3 EME1 EME1 RAD50 RAD50 UIMC1 UIMC1 RMI2 RMI2 SLX4 SLX4 UBE2I UBE2I PALB2 PALB2 MEIOB MEIOB TOP3A TOP3A SIRT6 SIRT6 AV530_018590 AV530_018590 PCNA PCNA RNF168 RNF168 KXD1 KXD1 BABAM1 BABAM1 PIAS4 PIAS4 RNF169 RNF169 POLD3 POLD3 AV530_007031 AV530_007031 UBE2N UBE2N RFC5 RFC5 XRCC2 XRCC2 DNA2 DNA2 NBN NBN RBBP8 RBBP8 POLD2 POLD2 UBE2V2 UBE2V2 SPIDR SPIDR AV530_006274 AV530_006274 AV530_008356 AV530_008356 RAD51B RAD51B RAD1 RAD1 RMI1 RMI1 TOPBP1 TOPBP1 RAD17 RAD17 RPA3 RPA3 AV530_009844 AV530_009844 XRCC3 XRCC3 ATM ATM RFC3 RFC3 BRCA2 BRCA2 CCNA1 CCNA1 PPP4R2 PPP4R2 PARP3 PARP3 RAD52 RAD52 RAD51AP1 RAD51AP1 BARD1 BARD1 RFC4 RFC4 ATR ATR AV530_012178 AV530_012178 RFC2 RFC2 LIG3 LIG3 RPA1 RPA1 RAD51D RAD51D UBC UBC RAD51C RAD51C BRIP1 BRIP1 AV530_000036 AV530_000036 AV530_004707 AV530_004707 ATRIP ATRIP HUS1 HUS1 FAM175A FAM175A CCNA2 CCNA2 RAD9B RAD9B BRCA1 BRCA1 KAT7 KAT7 AV530_013466 AV530_013466 RAD51 RAD51 FEN1 FEN1 RAD9A RAD9A GEN1 GEN1 EXO1 EXO1 AV530_008472 AV530_008472 POLH POLH RPA2 RPA2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BREBRCA1-A complex subunit BRE. (495 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
SLF1Ankyrin repeat domain-containing protein 32. (925 aa)
AV530_008416Uncharacterized protein. (102 aa)
NARSAsparagine--tRNA ligase, cytoplasmic. (1015 aa)
AV530_017375Reverse transcriptase domain-containing protein. (274 aa)
RFC1Replication factor C subunit 1. (1150 aa)
WHSC1Histone-lysine N-methyltransferase NSD2. (1394 aa)
POLNDNA polymerase nu isoform D. (814 aa)
AV530_000729Histone H2B; Belongs to the histone H2B family. (123 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (279 aa)
BLMBloom syndrome protein. (1899 aa)
TP53BP1Tumor suppressor p53-binding protein 1 isoform A. (1799 aa)
SIRT7NAD-dependent protein deacetylase sirtuin-7. (284 aa)
TIMELESSTimeless-like protein. (1145 aa)
POLQDNA polymerase theta isoform B. (2624 aa)
RHNO1RAD9, HUS1, RAD1-interacting nuclear protein 1. (277 aa)
AV530_013085Histone H2B; Belongs to the histone H2B family. (126 aa)
AV530_013083Histone H2B; Belongs to the histone H2B family. (126 aa)
AV530_013074Histone H2B; Belongs to the histone H2B family. (126 aa)
ANKRD12Ankyrin repeat domain-containing protein 12. (1993 aa)
POLE3DNA polymerase epsilon subunit 3. (171 aa)
ABL1Tyrosine-protein kinase. (1195 aa)
CHEK1Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (476 aa)
RCBTB1RCC1 and BTB domain-containing protein 1. (531 aa)
TDRD3Tudor domain-containing protein 3. (786 aa)
AV530_017028RCC1 and BTB domain-containing protein 2. (591 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2276 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (178 aa)
MRE11ADouble-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (707 aa)
POLKDNA polymerase kappa isoform B. (944 aa)
POLE2DNA polymerase epsilon subunit 2. (315 aa)
AV530_007135DNA_pol_E_B domain-containing protein. (226 aa)
RECQL4ATP-dependent DNA helicase Q4. (920 aa)
WRNWerner syndrome ATP-dependent helicase isoform B. (1720 aa)
AV530_000249Short transient receptor potential channel 2-like. (325 aa)
BRCC3Lys-63-specific deubiquitinase BRCC36 isoform B. (261 aa)
CDK3Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily. (309 aa)
EME1Crossover junction endonuclease EME1 isoform A. (528 aa)
RAD50DNA repair protein RAD50. (1312 aa)
UIMC1BRCA1-A complex subunit RAP80 isoform C. (807 aa)
RMI2RecQ-mediated genome instability protein 2. (139 aa)
SLX4Structure-specific endonuclease subunit SLX4. (1871 aa)
UBE2ISUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
PALB2Partner and localizer of BRCA2. (1171 aa)
MEIOBMeiosis-specific with OB domain-containing protein isoform B. (493 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1016 aa)
SIRT6NAD-dependent protein deacetylase sirtuin-6. (357 aa)
AV530_018590Histone H2B; Belongs to the histone H2B family. (126 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (603 aa)
KXD1KxDL motif-containing protein 1. (190 aa)
BABAM1BRISC and BRCA1-A complex member 1. (177 aa)
PIAS4E3 SUMO-protein ligase PIAS4. (495 aa)
RNF169E3 ubiquitin-protein ligase RNF169. (527 aa)
POLD3DNA polymerase delta subunit 3 isoform B. (405 aa)
AV530_007031Uncharacterized protein. (93 aa)
UBE2NUbiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
RFC5Replication factor C subunit 5. (255 aa)
XRCC2DNA repair protein XRCC2. (278 aa)
DNA2DNA replication ATP-dependent helicase/nuclease DNA2. (1030 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (755 aa)
RBBP8DNA endonuclease RBBP8. (428 aa)
POLD2DNA polymerase delta subunit 2. (407 aa)
UBE2V2Ubiquitin-conjugating enzyme E2 variant 2. (144 aa)
SPIDRDNA repair-scaffolding protein. (947 aa)
AV530_006274CtIP_N domain-containing protein. (333 aa)
AV530_008356Uncharacterized protein. (99 aa)
RAD51BDNA repair RAD51-like protein 2 isoform A. (447 aa)
RAD1Cell cycle checkpoint protein RAD1. (281 aa)
RMI1RecQ-mediated genome instability protein 1 isoform A. (627 aa)
TOPBP1DNA topoisomerase 2-binding protein 1. (1518 aa)
RAD17Cell cycle checkpoint protein RAD17. (690 aa)
RPA3Replication protein A subunit. (121 aa)
AV530_009844Uncharacterized protein. (98 aa)
XRCC3DNA repair protein XRCC3. (330 aa)
ATMNon-specific serine/threonine protein kinase. (3037 aa)
RFC3Replication factor C subunit 3. (356 aa)
BRCA2Breast cancer type 2 susceptibility protein isoform C. (3432 aa)
CCNA1Cyclin-A1; Belongs to the cyclin family. (387 aa)
PPP4R2Serine/threonine-protein phosphatase 4 regulatory subunit 2. (405 aa)
PARP3Poly [ADP-ribose] polymerase. (180 aa)
RAD52DNA repair RAD52-like protein. (454 aa)
RAD51AP1RAD51-associated protein 1. (377 aa)
BARD1BRCA1-associated RING domain protein 1. (787 aa)
RFC4Replication factor C subunit 4. (362 aa)
ATRSerine/threonine-protein kinase ATR isoform A; Belongs to the PI3/PI4-kinase family. (2619 aa)
AV530_012178Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (668 aa)
RFC2Replication factor C subunit 2. (355 aa)
LIG3DNA ligase. (904 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (646 aa)
RAD51DDNA repair RAD51-like protein 4. (375 aa)
UBCPolyubiquitin-C isoform A. (365 aa)
RAD51CDNA repair RAD51-like protein 3. (366 aa)
BRIP1Fanconi anemia group J protein. (886 aa)
AV530_000036Histone H2B; Belongs to the histone H2B family. (180 aa)
AV530_004707CBFD_NFYB_HMF domain-containing protein. (70 aa)
ATRIPATR-interacting protein. (715 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (284 aa)
FAM175ABRCA1-A complex subunit Abraxas. (403 aa)
CCNA2Cyclin-A2; Belongs to the cyclin family. (299 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (405 aa)
BRCA1Breast cancer type 1 susceptibility protein. (1749 aa)
KAT7Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (611 aa)
AV530_013466Uncharacterized protein. (130 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (357 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (412 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (381 aa)
GEN1Flap endonuclease GEN-like protein 1. (901 aa)
EXO1Exonuclease 1. (858 aa)
AV530_008472Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (286 aa)
POLHDNA polymerase eta. (689 aa)
RPA2Replication protein A subunit. (271 aa)
Your Current Organism:
Patagioenas fasciata
NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis
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