STRINGSTRING
AV530_008697 AV530_008697 RPS27A RPS27A RAD23B RAD23B POLE POLE CUL4A CUL4A CHD1L CHD1L ERCC5 ERCC5 AV530_017028 AV530_017028 SPATS2 SPATS2 XPA XPA RCBTB1 RCBTB1 NAIP NAIP POLE3 POLE3 NFRKB NFRKB INO80C INO80C RPAP3 RPAP3 RBX1 RBX1 COPS7A COPS7A VTCN1 VTCN1 RNF111 RNF111 PIAS1 PIAS1 COPS2 COPS2 RFC1 RFC1 XPC XPC RUVBL1 RUVBL1 PARP1 PARP1 RPA2 RPA2 GTF2H5 GTF2H5 USP45 USP45 GTF2H1 GTF2H1 AV530_013466 AV530_013466 DDB1 DDB1 GTF2H3 GTF2H3 AV530_010142 AV530_010142 CCNH CCNH CETN3 CETN3 COPS4 COPS4 ERCC2 ERCC2 SUMO1 SUMO1 AV530_009474 AV530_009474 AV530_004707 AV530_004707 UBC UBC RPA1 RPA1 RFC2 RFC2 VWA5B2 VWA5B2 ERCC4 ERCC4 GPS1 GPS1 RFC4 RFC4 ERCC3 ERCC3 COPS8 COPS8 PARP3 PARP3 ACTR8 ACTR8 AV530_014737 AV530_014737 RFC3 RFC3 MNAT1 MNAT1 YY1 YY1 RPA3 RPA3 YY1-2 YY1-2 INO80 INO80 DDB2 DDB2 AV530_013625 AV530_013625 UBE2V2 UBE2V2 COPS5 COPS5 POLD2 POLD2 ACTR5 ACTR5 COPS7B COPS7B RFC5 RFC5 UBE2N UBE2N AV530_007031 AV530_007031 POLD3 POLD3 AV530_018941 AV530_018941 CDK7 CDK7 KXD1 KXD1 PCNA PCNA AV530_009546 AV530_009546 COPS3 COPS3 MEIOB MEIOB UBE2I UBE2I AV530_016344 AV530_016344 SUMO2 SUMO2 ATAD5 ATAD5 KCTD2 KCTD2 AV530_003886 AV530_003886 AV530_003887 AV530_003887 GTF2H4 GTF2H4 AV530_017627 AV530_017627 AV530_007135 AV530_007135 POLE2 POLE2 POLK POLK INO80D INO80D AV530_017641 AV530_017641
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AV530_008697Protein kinase domain-containing protein. (86 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (178 aa)
RAD23BUV excision repair RAD23-like protein B. (400 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2276 aa)
CUL4ACullin-4A; Belongs to the cullin family. (770 aa)
CHD1LChromodomain-helicase-DNA-binding protein 1-like. (887 aa)
ERCC5DNA repair protein complementing XP-G cells. (1128 aa)
AV530_017028RCC1 and BTB domain-containing protein 2. (591 aa)
SPATS2Spermatogenesis-associated serine-rich protein 2. (799 aa)
XPADNA repair protein complementing XP-A cells. (180 aa)
RCBTB1RCC1 and BTB domain-containing protein 1. (531 aa)
NAIPBaculoviral IAP repeat-containing protein 1. (1198 aa)
POLE3DNA polymerase epsilon subunit 3. (171 aa)
NFRKBNuclear factor related to kappa-B-binding protein isoform A. (1408 aa)
INO80CINO80 complex subunit C. (185 aa)
RPAP3RNA polymerase II-associated protein 3. (718 aa)
RBX1E3 ubiquitin-protein ligase RBX1. (108 aa)
COPS7ACOP9 signalosome complex subunit 7a. (266 aa)
VTCN1V-set domain-containing T-cell activation inhibitor 1. (79 aa)
RNF111E3 ubiquitin-protein ligase Arkadia isoform A. (1051 aa)
PIAS1E3 SUMO-protein ligase PIAS1. (651 aa)
COPS2COP9 signalosome complex subunit 2 isoform B. (450 aa)
RFC1Replication factor C subunit 1. (1150 aa)
XPCDNA repair protein complementing XP-C cells. (959 aa)
RUVBL1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
RPA2Replication protein A subunit. (271 aa)
GTF2H5General transcription factor IIH subunit 5. (103 aa)
USP45Ubiquitin carboxyl-terminal hydrolase. (818 aa)
GTF2H1General transcription factor IIH subunit 1. (581 aa)
AV530_013466Uncharacterized protein. (130 aa)
DDB1DNA damage-binding protein 1. (1140 aa)
GTF2H3General transcription factor IIH subunit 3. (307 aa)
AV530_010142Small ubiquitin-related modifier. (102 aa)
CCNHCyclin-H; Belongs to the cyclin family. (321 aa)
CETN3Centrin-3. (167 aa)
COPS4COP9 signalosome complex subunit 4. (406 aa)
ERCC2TFIIH basal transcription factor complex helicase XPD subunit. (198 aa)
SUMO1Small ubiquitin-related modifier. (101 aa)
AV530_009474Uncharacterized protein. (74 aa)
AV530_004707CBFD_NFYB_HMF domain-containing protein. (70 aa)
UBCPolyubiquitin-C isoform A. (365 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (646 aa)
RFC2Replication factor C subunit 2. (355 aa)
VWA5B2Von Willebrand factor A domain-containing protein 5B2. (1106 aa)
ERCC4DNA repair endonuclease XPF. (961 aa)
GPS1COP9 signalosome complex subunit 1. (471 aa)
RFC4Replication factor C subunit 4. (362 aa)
ERCC3TFIIH basal transcription factor complex helicase XPB subunit. (780 aa)
COPS8COP9 signalosome complex subunit 8. (207 aa)
PARP3Poly [ADP-ribose] polymerase. (180 aa)
ACTR8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (624 aa)
AV530_014737HELICc2 domain-containing protein. (147 aa)
RFC3Replication factor C subunit 3. (356 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
YY1Transcriptional repressor protein YY1. (269 aa)
RPA3Replication protein A subunit. (121 aa)
YY1-2Transcriptional repressor protein YY1. (226 aa)
INO80DNA helicase INO80. (1471 aa)
DDB2DNA damage-binding protein 2 isoform B. (516 aa)
AV530_013625MitMem_reg domain-containing protein. (103 aa)
UBE2V2Ubiquitin-conjugating enzyme E2 variant 2. (144 aa)
COPS5COP9 signalosome complex subunit 5 isoform B. (342 aa)
POLD2DNA polymerase delta subunit 2. (407 aa)
ACTR5Actin-related protein 5; Belongs to the actin family. (607 aa)
COPS7BCOP9 signalosome complex subunit 7b. (259 aa)
RFC5Replication factor C subunit 5. (255 aa)
UBE2NUbiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
AV530_007031Uncharacterized protein. (93 aa)
POLD3DNA polymerase delta subunit 3 isoform B. (405 aa)
AV530_018941Uncharacterized protein. (216 aa)
CDK7Cyclin-dependent kinase 7. (226 aa)
KXD1KxDL motif-containing protein 1. (190 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
AV530_009546PAPA-1 domain-containing protein. (380 aa)
COPS3COP9 signalosome complex subunit 3. (423 aa)
MEIOBMeiosis-specific with OB domain-containing protein isoform B. (493 aa)
UBE2ISUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
AV530_016344Von Willebrand factor A domain-containing protein 5A-like. (757 aa)
SUMO2Small ubiquitin-related modifier. (95 aa)
ATAD5ATPase family AAA domain-containing protein 5. (1801 aa)
KCTD2BTB/POZ domain-containing protein KCTD2 isoform A. (309 aa)
AV530_003886Cullin domain-containing protein; Belongs to the cullin family. (200 aa)
AV530_003887CULLIN_2 domain-containing protein; Belongs to the cullin family. (614 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (320 aa)
AV530_017627UBA domain-containing protein. (117 aa)
AV530_007135DNA_pol_E_B domain-containing protein. (226 aa)
POLE2DNA polymerase epsilon subunit 2. (315 aa)
POLKDNA polymerase kappa isoform B. (944 aa)
INO80DINO80 complex subunit D. (1030 aa)
AV530_017641HELICc2 domain-containing protein. (68 aa)
Your Current Organism:
Patagioenas fasciata
NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis
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