91 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RFC5	Replication factor C subunit 5. (255 aa)
	CDK7	Cyclin-dependent kinase 7. (226 aa)
	AV530_008697	Protein kinase domain-containing protein. (86 aa)
	AV530_017641	HELICc2 domain-containing protein. (68 aa)
	POLK	DNA polymerase kappa isoform B. (944 aa)
	USP40	Ubiquitin carboxyl-terminal hydrolase 40; Belongs to the peptidase C19 family. (1289 aa)
	POLE2	DNA polymerase epsilon subunit 2. (315 aa)
	AV530_007135	DNA_pol_E_B domain-containing protein. (226 aa)
	AV530_000249	Short transient receptor potential channel 2-like. (325 aa)
	GTF2H4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (320 aa)
	AV530_003887	CULLIN_2 domain-containing protein; Belongs to the cullin family. (614 aa)
	AV530_003886	Cullin domain-containing protein; Belongs to the cullin family. (200 aa)
	ATAD5	ATPase family AAA domain-containing protein 5. (1801 aa)
	USP7	Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family. (1103 aa)
	MEIOB	Meiosis-specific with OB domain-containing protein isoform B. (493 aa)
	COPS3	COP9 signalosome complex subunit 3. (423 aa)
	ERCC8	DNA excision repair protein ERCC-8 isoform B. (434 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
	KXD1	KxDL motif-containing protein 1. (190 aa)
	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	POLD3	DNA polymerase delta subunit 3 isoform B. (405 aa)
	AV530_007031	Uncharacterized protein. (93 aa)
	COPS7B	COP9 signalosome complex subunit 7b. (259 aa)
	ERCC6	DNA excision repair protein ERCC-6. (1554 aa)
	TCEA2	Transcription elongation factor A protein 2. (325 aa)
	POLD2	DNA polymerase delta subunit 2. (407 aa)
	POLR2K	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (128 aa)
	PPP1R42	Protein phosphatase 1 regulatory subunit 42. (334 aa)
	COPS5	COP9 signalosome complex subunit 5 isoform B. (342 aa)
	TCEA1	Transcription elongation factor A protein 1 isoform B. (304 aa)
	AV530_013625	MitMem_reg domain-containing protein. (103 aa)
	AV530_013971	RNA_pol_Rpb1_7 domain-containing protein. (101 aa)
	AQR	Intron-binding protein aquarius. (1467 aa)
	RPA3	Replication protein A subunit. (121 aa)
	NRDE2	NRDE2-like protein. (1170 aa)
	MNAT1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
	RFC3	Replication factor C subunit 3. (356 aa)
	AV530_014737	HELICc2 domain-containing protein. (147 aa)
	COPS8	COP9 signalosome complex subunit 8. (207 aa)
	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit. (780 aa)
	POLR2D	DNA-directed RNA polymerase II subunit RPB4. (142 aa)
	RFC4	Replication factor C subunit 4. (362 aa)
	GPS1	COP9 signalosome complex subunit 1. (471 aa)
	ERCC4	DNA repair endonuclease XPF. (961 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	ISY1	Pre-mRNA-splicing factor ISY1-like protein. (310 aa)
	POLR2J	DNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
	RFC2	Replication factor C subunit 2. (355 aa)
	LIG3	DNA ligase. (904 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (646 aa)
	UBC	Polyubiquitin-C isoform A. (365 aa)
	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial. (634 aa)
	AV530_004707	CBFD_NFYB_HMF domain-containing protein. (70 aa)
	TCEANC2	Transcription elongation factor A N-terminal and central domain-containing protein 2. (177 aa)
	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit. (198 aa)
	COPS4	COP9 signalosome complex subunit 4. (406 aa)
	CCNH	Cyclin-H; Belongs to the cyclin family. (321 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	GTF2H3	General transcription factor IIH subunit 3. (307 aa)
	DDB1	DNA damage-binding protein 1. (1140 aa)
	AV530_013466	Uncharacterized protein. (130 aa)
	PRPF19	Pre-mRNA-processing factor 19. (504 aa)
	GTF2H1	General transcription factor IIH subunit 1. (581 aa)
	POLR2L	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	PHF3	PHD finger protein 3. (954 aa)
	AV530_005781	Uncharacterized protein. (1136 aa)
	GTF2H5	General transcription factor IIH subunit 5. (103 aa)
	RPA2	Replication protein A subunit. (271 aa)
	PPIE	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
	RFC1	Replication factor C subunit 1. (1150 aa)
	COPS2	COP9 signalosome complex subunit 2 isoform B. (450 aa)
	UVSSA	UV-stimulated scaffold protein A isoform A. (429 aa)
	AV530_017169	Uncharacterized protein. (338 aa)
	TCEANC	Transcription elongation factor A N-terminal and central domain-containing protein. (360 aa)
	TCEA3	Transcription elongation factor A protein 3. (413 aa)
	COPS7A	COP9 signalosome complex subunit 7a. (266 aa)
	RBX1	E3 ubiquitin-protein ligase RBX1. (108 aa)
	EP300	Histone acetyltransferase p300. (1778 aa)
	POLR2F	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
	ZNF830	Zinc finger protein 830. (362 aa)
	POLE3	DNA polymerase epsilon subunit 3. (171 aa)
	NAIP	Baculoviral IAP repeat-containing protein 1. (1198 aa)
	RCBTB1	RCC1 and BTB domain-containing protein 1. (531 aa)
	XPA	DNA repair protein complementing XP-A cells. (180 aa)
	AV530_017028	RCC1 and BTB domain-containing protein 2. (591 aa)
	ERCC5	DNA repair protein complementing XP-G cells. (1128 aa)
	CUL4A	Cullin-4A; Belongs to the cullin family. (770 aa)
	POLE	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2276 aa)
	HMGN1	Non-histone chromosomal protein HMG-14. (102 aa)
	AV530_004421	Uncharacterized protein. (606 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (178 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR	ISY1	A0A1V4KFA9	A0A1V4K345	Intron-binding protein aquarius.	Pre-mRNA-splicing factor ISY1-like protein.	0.998
AQR	POLE3	A0A1V4KFA9	A0A1V4J720	Intron-binding protein aquarius.	DNA polymerase epsilon subunit 3.	0.487
AQR	POLR2B	A0A1V4KFA9	A0A1V4JSU6	Intron-binding protein aquarius.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.521
AQR	PPIE	A0A1V4KFA9	A0A1V4JHP5	Intron-binding protein aquarius.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.998
AQR	PRPF19	A0A1V4KFA9	A0A1V4JPK4	Intron-binding protein aquarius.	Pre-mRNA-processing factor 19.	0.999
AQR	ZNF830	A0A1V4KFA9	A0A1V4J816	Intron-binding protein aquarius.	Zinc finger protein 830.	0.995
ATAD5	AV530_000249	A0A1V4KX51	A0A1V4KZL2	ATPase family AAA domain-containing protein 5.	Short transient receptor potential channel 2-like.	0.630
ATAD5	AV530_003886	A0A1V4KX51	A0A1V4KYU7	ATPase family AAA domain-containing protein 5.	Cullin domain-containing protein; Belongs to the cullin family.	0.601
ATAD5	AV530_003887	A0A1V4KX51	A0A1V4KYZ1	ATPase family AAA domain-containing protein 5.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.601
ATAD5	AV530_004707	A0A1V4KX51	A0A1V4JZD4	ATPase family AAA domain-containing protein 5.	CBFD_NFYB_HMF domain-containing protein.	0.720
ATAD5	AV530_007031	A0A1V4KX51	A0A1V4KN60	ATPase family AAA domain-containing protein 5.	Uncharacterized protein.	0.759
ATAD5	AV530_007135	A0A1V4KX51	A0A1V4L075	ATPase family AAA domain-containing protein 5.	DNA_pol_E_B domain-containing protein.	0.780
ATAD5	AV530_013466	A0A1V4KX51	A0A1V4JPW5	ATPase family AAA domain-containing protein 5.	Uncharacterized protein.	0.484
ATAD5	AV530_014737	A0A1V4KX51	A0A1V4K9E1	ATPase family AAA domain-containing protein 5.	HELICc2 domain-containing protein.	0.642
ATAD5	AV530_017641	A0A1V4KX51	A0A1V4L1B1	ATPase family AAA domain-containing protein 5.	HELICc2 domain-containing protein.	0.642
ATAD5	CUL4A	A0A1V4KX51	A0A1V4J3P5	ATPase family AAA domain-containing protein 5.	Cullin-4A; Belongs to the cullin family.	0.601
ATAD5	DDB1	A0A1V4KX51	A0A1V4JQX0	ATPase family AAA domain-containing protein 5.	DNA damage-binding protein 1.	0.620
ATAD5	ERCC2	A0A1V4KX51	A0A1V4JVI3	ATPase family AAA domain-containing protein 5.	TFIIH basal transcription factor complex helicase XPD subunit.	0.642
ATAD5	ERCC4	A0A1V4KX51	A0A1V4K4P2	ATPase family AAA domain-containing protein 5.	DNA repair endonuclease XPF.	0.709
ATAD5	ERCC5	A0A1V4KX51	A0A1V4J3U4	ATPase family AAA domain-containing protein 5.	DNA repair protein complementing XP-G cells.	0.808