53 items (Patagioenas fasciata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial. (634 aa)
	AV530_000503	Serine/arginine-rich splicing factor 7-like. (238 aa)
	AV530_000501	RRM domain-containing protein. (177 aa)
	AV530_004421	Uncharacterized protein. (606 aa)
	SF3B4	Splicing factor 3B subunit 4. (237 aa)
	AV530_008795	Tr-type G domain-containing protein. (345 aa)
	GTF2F2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (262 aa)
	NCBP1	Nuclear cap-binding protein subunit 1. (791 aa)
	POLR2F	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
	ZCRB1	Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (185 aa)
	YBX3	Y-box-binding protein 3. (313 aa)
	ZRSR2	U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein 2. (327 aa)
	AV530_012617	Uncharacterized protein. (71 aa)
	UBAP1L	Ubiquitin-associated protein 1-like isoform B. (851 aa)
	AV530_008430	Uncharacterized protein. (436 aa)
	SNRNP40	U5 small nuclear ribonucleoprotein. (298 aa)
	SF3B5	Splicing factor 3B subunit 5. (145 aa)
	SF3B6	Splicing factor 3B subunit 6. (123 aa)
	POLR2L	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	DDX42	ATP-dependent RNA helicase DDX42. (952 aa)
	AV530_010187	EFG_IV domain-containing protein. (217 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (88 aa)
	SNRNP35	U11/U12 small nuclear ribonucleoprotein. (265 aa)
	ZMAT5	Zinc finger matrin-type protein 5. (100 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	DDX23	Putative ATP-dependent RNA helicase DDX23 isoform B. (820 aa)
	SNRNP48	U11/U12 small nuclear ribonucleoprotein. (305 aa)
	RNPC3	Alpha-amylase. (877 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	SRSF1	Serine/arginine-rich splicing factor 1. (248 aa)
	PRPF8	Pre-mRNA-processing-splicing factor 8. (2700 aa)
	POLR2J	DNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	AV530_005013	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
	POLR2D	DNA-directed RNA polymerase II subunit RPB4. (142 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (102 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	AV530_013971	RNA_pol_Rpb1_7 domain-containing protein. (101 aa)
	POLR2K	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (128 aa)
	PRPF6	Pre-mRNA-processing factor 6. (941 aa)
	AV530_018094	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	AV530_009222	Myotubularin phosphatase domain-containing protein. (288 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (86 aa)
	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	AV530_011461	CSD_1 domain-containing protein. (431 aa)
	SNRPG	Small nuclear ribonucleoprotein G. (76 aa)
	SNRNP200	U5 small nuclear ribonucleoprotein helicase. (2094 aa)
	AV530_007864	Uncharacterized protein. (97 aa)
	AV530_007865	PSP domain-containing protein. (497 aa)
	SNRNP25	U11/U12 small nuclear ribonucleoprotein. (91 aa)
	SRSF2	Serine/arginine-rich splicing factor 2. (264 aa)
	AV530_003752	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
	SF3B1	Splicing factor 3B subunit 1. (1301 aa)

Your Current Organism:

Patagioenas fasciata

NCBI taxonomy Id: 372326
Other names: P. fasciata monilis, Patagioenas fasciata monilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AV530_000501	AV530_003752	A0A1V4IFP2	A0A1V4KYU1	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.742
AV530_000501	AV530_005013	A0A1V4IFP2	A0A1V4K3V3	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.742
AV530_000501	AV530_011461	A0A1V4IFP2	A0A1V4KR75	RRM domain-containing protein.	CSD_1 domain-containing protein.	0.539
AV530_000501	AV530_012617	A0A1V4IFP2	A0A1V4JCW1	RRM domain-containing protein.	Uncharacterized protein.	0.742
AV530_000501	COQ9	A0A1V4IFP2	A0A1V4K0X7	RRM domain-containing protein.	Ubiquinone biosynthesis protein COQ9, mitochondrial.	0.596
AV530_000501	DDX23	A0A1V4IFP2	A0A1V4JVI6	RRM domain-containing protein.	Putative ATP-dependent RNA helicase DDX23 isoform B.	0.478
AV530_000501	DDX42	A0A1V4IFP2	A0A1V4JQX9	RRM domain-containing protein.	ATP-dependent RNA helicase DDX42.	0.464
AV530_000501	GTF2F2	A0A1V4IFP2	A0A1V4J4B5	RRM domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.606
AV530_000501	NCBP1	A0A1V4IFP2	A0A1V4J6J9	RRM domain-containing protein.	Nuclear cap-binding protein subunit 1.	0.688
AV530_000501	POLR2D	A0A1V4IFP2	A0A1V4K5X2	RRM domain-containing protein.	DNA-directed RNA polymerase II subunit RPB4.	0.618
AV530_000501	POLR2E	A0A1V4IFP2	A0A1V4KQ69	RRM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.619
AV530_000501	POLR2F	A0A1V4IFP2	A0A1V4J9M5	RRM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.617
AV530_000501	POLR2H	A0A1V4IFP2	A0A1V4K3K2	RRM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.617
AV530_000501	POLR2J	A0A1V4IFP2	A0A1V4K302	RRM domain-containing protein.	DNA-directed RNA polymerase II subunit RPB11-a.	0.619
AV530_000501	POLR2K	A0A1V4IFP2	A0A1V4KH41	RRM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.621
AV530_000501	POLR2L	A0A1V4IFP2	A0A1V4JNH9	RRM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.621
AV530_000501	SNRNP35	A0A1V4IFP2	A0A1V4JSD0	RRM domain-containing protein.	U11/U12 small nuclear ribonucleoprotein.	0.804
AV530_000501	SNRPD1	A0A1V4IFP2	A0A1V4K784	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.571
AV530_000501	SNRPD3	A0A1V4IFP2	A0A1V4JRH5	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.454
AV530_000501	SNRPF	A0A1V4IFP2	A0A1V4KPX6	RRM domain-containing protein.	Small nuclear ribonucleoprotein F.	0.546