(6 nodes) CCAAT-binding factor complex network (Aotus nancymaae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ING2	Inhibitor of growth protein. (279 aa)
	NFYB	Nuclear transcription factor Y subunit beta. (208 aa)
	CEBPZ	CCAAT enhancer binding protein zeta. (1054 aa)
	ATF2	Activating transcription factor 2. (287 aa)
	ENSANAP00000013693	Uncharacterized protein. (110 aa)
	NFYA	Nuclear transcription factor Y subunit alpha. (347 aa)

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATF2	ENSANAP00000013693	ENSANAP00000039927	ENSANAP00000013693	Activating transcription factor 2.	Uncharacterized protein.	0.857
CEBPZ	NFYB	ENSANAP00000026195	ENSANAP00000035627	CCAAT enhancer binding protein zeta.	Nuclear transcription factor Y subunit beta.	0.450
ENSANAP00000013693	ATF2	ENSANAP00000013693	ENSANAP00000039927	Uncharacterized protein.	Activating transcription factor 2.	0.857
NFYA	NFYB	ENSANAP00000041933	ENSANAP00000035627	Nuclear transcription factor Y subunit alpha.	Nuclear transcription factor Y subunit beta.	0.999
NFYB	CEBPZ	ENSANAP00000035627	ENSANAP00000026195	Nuclear transcription factor Y subunit beta.	CCAAT enhancer binding protein zeta.	0.450
NFYB	NFYA	ENSANAP00000035627	ENSANAP00000041933	Nuclear transcription factor Y subunit beta.	Nuclear transcription factor Y subunit alpha.	0.999