STRINGSTRING
RO60 RO60 SNRPA SNRPA SNRPD3 SNRPD3 ENSANAP00000029051 ENSANAP00000029051 PRPF8 PRPF8 METTL16 METTL16 ENSANAP00000030478 ENSANAP00000030478 RBM22 RBM22 HNRNPU HNRNPU HEXIM2 HEXIM2 LOC105732708 LOC105732708 LSM3 LSM3 LSM4 LSM4 MEPCE MEPCE SNRNP70 SNRNP70 LSM7 LSM7 RBM41 RBM41 ENSANAP00000040868 ENSANAP00000040868 DDX21 DDX21 CDK9 CDK9 SNRPA1 SNRPA1 SART3 SART3 SNRNP35 SNRNP35 TOE1 TOE1 SNU13 SNU13 LRMDA LRMDA LOC105707612 LOC105707612 SNRPB2 SNRPB2 PRPF4 PRPF4 ENSANAP00000008610 ENSANAP00000008610 ENSANAP00000008382 ENSANAP00000008382 GEMIN5 GEMIN5 SNRPC-6 SNRPC-6 SNRPC-5 SNRPC-5 PRPF31 PRPF31 SNRPC-4 SNRPC-4 SNRPC-3 SNRPC-3 SNRPC SNRPC LOC105724032 LOC105724032 CCNT1 CCNT1 LOC105732158 LOC105732158 LSM10 LSM10 HEXIM1 HEXIM1 SNRPC-2 SNRPC-2 CCNT2 CCNT2 LOC105721199 LOC105721199 ENSANAP00000000139 ENSANAP00000000139 CELF3 CELF3 ENSANAP00000026018 ENSANAP00000026018 LARP7 LARP7 ENSANAP00000027062 ENSANAP00000027062 LOC105704914 LOC105704914 RBM7 RBM7 DDX39B DDX39B LOC105715551 LOC105715551 TUT1 TUT1 LSM11 LSM11 LSM2 LSM2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RO60Ro60, Y RNA binding protein. (538 aa)
SNRPAUncharacterized protein. (274 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
ENSANAP00000029051C3H1-type domain-containing protein. (496 aa)
PRPF8Pre-mRNA processing factor 8. (2335 aa)
METTL16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (556 aa)
ENSANAP00000030478B30.2/SPRY domain-containing protein. (605 aa)
RBM22Uncharacterized protein. (445 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (806 aa)
HEXIM2HEXIM P-TEFb complex subunit 2. (286 aa)
LOC105732708Uncharacterized protein. (258 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
MEPCEMethylphosphate capping enzyme. (678 aa)
SNRNP70Small nuclear ribonucleoprotein U1 subunit 70. (425 aa)
LSM7Sm domain-containing protein. (103 aa)
RBM41RNA binding motif protein 41. (437 aa)
ENSANAP00000040868Protein kinase domain-containing protein. (360 aa)
DDX21DExD-box helicase 21. (783 aa)
CDK9Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (372 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
SART3Spliceosome associated factor 3, U4/U6 recycling protein. (963 aa)
SNRNP35Small nuclear ribonucleoprotein U11/U12 subunit 35. (255 aa)
TOE1C3H1-type domain-containing protein. (525 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (132 aa)
LRMDALeucine rich melanocyte differentiation associated. (226 aa)
LOC105707612Uncharacterized protein. (88 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (224 aa)
PRPF4Pre-mRNA processing factor 4. (542 aa)
ENSANAP00000008610HTH La-type RNA-binding domain-containing protein. (529 aa)
ENSANAP00000008382Sm domain-containing protein. (96 aa)
GEMIN5Gem nuclear organelle associated protein 5. (1418 aa)
SNRPC-6U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (139 aa)
SNRPC-5U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (165 aa)
PRPF31Pre-mRNA processing factor 31. (441 aa)
SNRPC-4U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (171 aa)
SNRPC-3U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (163 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (180 aa)
LOC105724032Uncharacterized protein. (371 aa)
CCNT1Cyclin T1. (721 aa)
LOC105732158U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
LSM10Sm domain-containing protein. (123 aa)
HEXIM1HEXIM P-TEFb complex subunit 1. (359 aa)
SNRPC-2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
CCNT2Cyclin T2; Belongs to the cyclin family. (663 aa)
LOC105721199U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
ENSANAP00000000139Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
CELF3CUGBP Elav-like family member 3. (476 aa)
ENSANAP00000026018Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (352 aa)
LARP7Uncharacterized protein. (574 aa)
ENSANAP00000027062RRM domain-containing protein. (156 aa)
LOC105704914Sm domain-containing protein. (122 aa)
RBM7RRM domain-containing protein. (156 aa)
DDX39BDExD-box helicase 39B. (428 aa)
LOC105715551Uncharacterized protein. (143 aa)
TUT1RRM domain-containing protein. (874 aa)
LSM11LSM11, U7 small nuclear RNA associated. (293 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
Your Current Organism:
Aotus nancymaae
NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai
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