(47 nodes) Positive regulation of RNA splicing network (Aotus nancymaae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRPF19	Pre-mRNA processing factor 19. (505 aa)
	ERN1	Endoplasmic reticulum to nucleus signaling 1. (1012 aa)
	LOC105724032	Uncharacterized protein. (371 aa)
	POLR2A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
	NUP98	Nucleoporin 98. (1816 aa)
	HABP4	Hyaluronan binding protein 4. (375 aa)
	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L like. (542 aa)
	HSPA8	Heat shock protein family A (Hsp70) member 8; Belongs to the heat shock protein 70 family. (646 aa)
	RBM22	Uncharacterized protein. (445 aa)
	SLC38A2	Solute carrier family 38 member 2. (506 aa)
	TRA2B	Transformer 2 beta homolog. (284 aa)
	LOC105730592	Uncharacterized protein. (941 aa)
	ENSANAP00000012173	Uncharacterized protein; Belongs to the heat shock protein 70 family. (608 aa)
	RBM20	RNA binding motif protein 20. (1228 aa)
	PIK3R1	Phosphoinositide-3-kinase regulatory subunit 1. (723 aa)
	LOC105707840	RRM domain-containing protein. (380 aa)
	SNW1	SNW domain containing 1. (536 aa)
	SF3B4	Splicing factor 3b subunit 4. (424 aa)
	ENSANAP00000026468	Uncharacterized protein. (66 aa)
	LOC105705668	Uncharacterized protein. (441 aa)
	ENSANAP00000012899	Uncharacterized protein. (621 aa)
	THRAP3	Uncharacterized protein. (955 aa)
	ENSANAP00000014383	RRM domain-containing protein. (335 aa)
	TRA2A	Transformer 2 alpha homolog. (226 aa)
	HMX2	H6 family homeobox 2. (273 aa)
	DAZAP1	DAZ associated protein 1. (407 aa)
	ENSANAP00000038686	Uncharacterized protein; Belongs to the heat shock protein 70 family. (621 aa)
	SNRNP70	Small nuclear ribonucleoprotein U1 subunit 70. (425 aa)
	ENSANAP00000039552	RRM domain-containing protein. (388 aa)
	ENSANAP00000040315	RRM domain-containing protein. (129 aa)
	SLC39A5	Solute carrier family 39 member 5. (539 aa)
	DYRK1A	Dual specificity tyrosine phosphorylation regulated kinase 1A. (781 aa)
	WDR77	WD repeat domain 77. (342 aa)
	LOC105718730	RRM domain-containing protein. (378 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (789 aa)
	ZPR1	ZPR1 zinc finger. (459 aa)
	LOC105732281	Uncharacterized protein; Belongs to the heat shock protein 70 family. (636 aa)
	SRSF5	Uncharacterized protein. (271 aa)
	U2AF2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (406 aa)
	SETX	Senataxin. (2678 aa)
	RBMX	RRM domain-containing protein. (391 aa)
	ENSANAP00000021533	RRM domain-containing protein. (408 aa)
	LOC105726913	RRM domain-containing protein. (147 aa)
	RBM3	RRM domain-containing protein. (168 aa)
	ENSANAP00000022886	RRM domain-containing protein. (251 aa)
	CELF4	CUGBP Elav-like family member 4. (486 aa)
	CELF3	CUGBP Elav-like family member 3. (476 aa)

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAZAP1	TRA2A	ENSANAP00000037351	ENSANAP00000035277	DAZ associated protein 1.	Transformer 2 alpha homolog.	0.442
ENSANAP00000012173	PRPF19	ENSANAP00000012173	ENSANAP00000007519	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Pre-mRNA processing factor 19.	0.552
ENSANAP00000012899	ENSANAP00000021533	ENSANAP00000012899	ENSANAP00000021533	Uncharacterized protein.	RRM domain-containing protein.	0.452
ENSANAP00000012899	LOC105707840	ENSANAP00000012899	ENSANAP00000030568	Uncharacterized protein.	RRM domain-containing protein.	0.459
ENSANAP00000012899	NCBP1	ENSANAP00000012899	ENSANAP00000015812	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.659
ENSANAP00000014383	NCBP1	ENSANAP00000014383	ENSANAP00000015812	RRM domain-containing protein.	Nuclear cap binding protein subunit 1.	0.423
ENSANAP00000014383	TRA2B	ENSANAP00000014383	ENSANAP00000009491	RRM domain-containing protein.	Transformer 2 beta homolog.	0.545
ENSANAP00000021533	ENSANAP00000012899	ENSANAP00000021533	ENSANAP00000012899	RRM domain-containing protein.	Uncharacterized protein.	0.452
ENSANAP00000021533	NCBP1	ENSANAP00000021533	ENSANAP00000015812	RRM domain-containing protein.	Nuclear cap binding protein subunit 1.	0.423
ENSANAP00000021533	TRA2A	ENSANAP00000021533	ENSANAP00000035277	RRM domain-containing protein.	Transformer 2 alpha homolog.	0.440
ENSANAP00000021533	TRA2B	ENSANAP00000021533	ENSANAP00000009491	RRM domain-containing protein.	Transformer 2 beta homolog.	0.571
ENSANAP00000022886	ENSANAP00000040315	ENSANAP00000022886	ENSANAP00000040315	RRM domain-containing protein.	RRM domain-containing protein.	0.622
ENSANAP00000022886	HNRNPLL	ENSANAP00000022886	ENSANAP00000034833	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein L like.	0.512
ENSANAP00000022886	NCBP1	ENSANAP00000022886	ENSANAP00000015812	RRM domain-containing protein.	Nuclear cap binding protein subunit 1.	0.612
ENSANAP00000022886	POLR2A	ENSANAP00000022886	ENSANAP00000004459	RRM domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.534
ENSANAP00000022886	SRSF5	ENSANAP00000022886	ENSANAP00000020407	RRM domain-containing protein.	Uncharacterized protein.	0.622
ENSANAP00000022886	U2AF2	ENSANAP00000022886	ENSANAP00000020523	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.510
ENSANAP00000038686	PRPF19	ENSANAP00000038686	ENSANAP00000007519	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Pre-mRNA processing factor 19.	0.552
ENSANAP00000039552	NCBP1	ENSANAP00000039552	ENSANAP00000015812	RRM domain-containing protein.	Nuclear cap binding protein subunit 1.	0.423
ENSANAP00000039552	TRA2A	ENSANAP00000039552	ENSANAP00000035277	RRM domain-containing protein.	Transformer 2 alpha homolog.	0.434