(41 nodes) pre-mRNA binding network (Aotus nancymaae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (661 aa)
	LOC105707061	Uncharacterized protein. (220 aa)
	ZRSR2	Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (474 aa)
	LOC105724032	Uncharacterized protein. (371 aa)
	ENSANAP00000003651	Uncharacterized protein. (72 aa)
	ENSANAP00000005761	Uncharacterized protein. (540 aa)
	LOC105707075	Uncharacterized protein. (519 aa)
	ENSANAP00000006491	Uncharacterized protein. (234 aa)
	ENSANAP00000009308	CCHC-type domain-containing protein. (609 aa)
	TRA2B	Transformer 2 beta homolog. (284 aa)
	SOX9	SRY-box transcription factor 9. (505 aa)
	ERI1	Exoribonuclease 1. (348 aa)
	SRSF6	Serine and arginine rich splicing factor 6. (344 aa)
	CELF5	CUGBP Elav-like family member 5. (422 aa)
	EP300	E1A binding protein p300. (2401 aa)
	U2AF1	Uncharacterized protein. (240 aa)
	SF1	CCHC-type domain-containing protein. (640 aa)
	U2AF2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (406 aa)
	SLU7	SLU7 homolog, splicing factor. (586 aa)
	ENSANAP00000021934	Uncharacterized protein. (459 aa)
	RBM24	RNA binding motif protein 24. (236 aa)
	LOC105717986	Uncharacterized protein. (539 aa)
	ENSANAP00000024545	Uncharacterized protein. (197 aa)
	LOC105715551	Uncharacterized protein. (143 aa)
	ELAVL4	ELAV-like protein; Belongs to the RRM elav family. (402 aa)
	CELF3	CUGBP Elav-like family member 3. (476 aa)
	ENSANAP00000027062	RRM domain-containing protein. (156 aa)
	RBM7	RRM domain-containing protein. (156 aa)
	PRPF8	Pre-mRNA processing factor 8. (2335 aa)
	ENSANAP00000030478	B30.2/SPRY domain-containing protein. (605 aa)
	RBM20	RNA binding motif protein 20. (1228 aa)
	RBM22	Uncharacterized protein. (445 aa)
	HNRNPU	Heterogeneous nuclear ribonucleoprotein U. (806 aa)
	LOC105733486	RRM domain-containing protein. (133 aa)
	ENSANAP00000032580	Uncharacterized protein. (172 aa)
	TARBP2	RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (366 aa)
	SLBP	Stem-loop binding protein. (277 aa)
	LOC105705110	Uncharacterized protein. (517 aa)
	ENSANAP00000037504	Uncharacterized protein. (513 aa)
	RBM41	RNA binding motif protein 41. (437 aa)
	PTBP1	Polypyrimidine tract binding protein 1. (557 aa)

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	ENSANAP00000009308	ENSANAP00000001239	ENSANAP00000009308	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	CCHC-type domain-containing protein.	0.688
DDX5	ENSANAP00000027062	ENSANAP00000001239	ENSANAP00000027062	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.717
DDX5	EP300	ENSANAP00000001239	ENSANAP00000015649	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	E1A binding protein p300.	0.733
DDX5	LOC105715551	ENSANAP00000001239	ENSANAP00000025401	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.717
DDX5	PRPF8	ENSANAP00000001239	ENSANAP00000030076	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 8.	0.516
DDX5	RBM7	ENSANAP00000001239	ENSANAP00000028052	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.717
DDX5	SF1	ENSANAP00000001239	ENSANAP00000017724	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	CCHC-type domain-containing protein.	0.688
DDX5	SLU7	ENSANAP00000001239	ENSANAP00000021111	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	SLU7 homolog, splicing factor.	0.708
DDX5	SRSF6	ENSANAP00000001239	ENSANAP00000012291	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 6.	0.417
ENSANAP00000003651	ENSANAP00000030478	ENSANAP00000003651	ENSANAP00000030478	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.488
ENSANAP00000003651	HNRNPU	ENSANAP00000003651	ENSANAP00000032399	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.488
ENSANAP00000003651	TRA2B	ENSANAP00000003651	ENSANAP00000009491	Uncharacterized protein.	Transformer 2 beta homolog.	0.621
ENSANAP00000003651	U2AF2	ENSANAP00000003651	ENSANAP00000020523	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.511
ENSANAP00000005761	ENSANAP00000030478	ENSANAP00000005761	ENSANAP00000030478	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.488
ENSANAP00000005761	HNRNPU	ENSANAP00000005761	ENSANAP00000032399	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.488
ENSANAP00000005761	TRA2B	ENSANAP00000005761	ENSANAP00000009491	Uncharacterized protein.	Transformer 2 beta homolog.	0.621
ENSANAP00000005761	U2AF2	ENSANAP00000005761	ENSANAP00000020523	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.511
ENSANAP00000006491	ENSANAP00000037504	ENSANAP00000006491	ENSANAP00000037504	Uncharacterized protein.	Uncharacterized protein.	0.410
ENSANAP00000006491	SLU7	ENSANAP00000006491	ENSANAP00000021111	Uncharacterized protein.	SLU7 homolog, splicing factor.	0.570
ENSANAP00000006491	SRSF6	ENSANAP00000006491	ENSANAP00000012291	Uncharacterized protein.	Serine and arginine rich splicing factor 6.	0.594