14 items (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IRF3	Interferon regulatory factor 3. (427 aa)
	USH1C	USH1 protein network component harmonin. (899 aa)
	ADAMTS18	ADAM metallopeptidase with thrombospondin type 1 motif 18. (1221 aa)
	GPR84	G protein-coupled receptor 84. (396 aa)
	SALL4	Spalt like transcription factor 4. (1054 aa)
	GASK1B	Golgi associated kinase 1B. (523 aa)
	ARID4B	AT-rich interaction domain 4B. (1314 aa)
	HIVEP3	Human immunodeficiency virus type I enhancer binding protein 3. (2403 aa)
	USH2A	Usherin. (5203 aa)
	IRX3	Iroquois homeobox 3. (501 aa)
	SCUBE2	Signal peptide, CUB domain and EGF like domain containing 2. (1017 aa)
	DIAPH2	Diaphanous related formin 2. (1096 aa)
	KIF1B	Kinesin family member 1B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1827 aa)
	TET2	Tet methylcytosine dioxygenase 2. (2000 aa)

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAMTS18	ARID4B	ENSANAP00000011231	ENSANAP00000041612	ADAM metallopeptidase with thrombospondin type 1 motif 18.	AT-rich interaction domain 4B.	0.642
ADAMTS18	DIAPH2	ENSANAP00000011231	ENSANAP00000020315	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Diaphanous related formin 2.	0.611
ADAMTS18	GASK1B	ENSANAP00000011231	ENSANAP00000038760	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Golgi associated kinase 1B.	0.601
ADAMTS18	GPR84	ENSANAP00000011231	ENSANAP00000000504	ADAM metallopeptidase with thrombospondin type 1 motif 18.	G protein-coupled receptor 84.	0.650
ADAMTS18	HIVEP3	ENSANAP00000011231	ENSANAP00000042425	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Human immunodeficiency virus type I enhancer binding protein 3.	0.616
ADAMTS18	IRX3	ENSANAP00000011231	ENSANAP00000013066	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Iroquois homeobox 3.	0.573
ADAMTS18	KIF1B	ENSANAP00000011231	ENSANAP00000020456	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Kinesin family member 1B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.609
ADAMTS18	SALL4	ENSANAP00000011231	ENSANAP00000010765	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Spalt like transcription factor 4.	0.661
ADAMTS18	SCUBE2	ENSANAP00000011231	ENSANAP00000016201	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Signal peptide, CUB domain and EGF like domain containing 2.	0.658
ADAMTS18	TET2	ENSANAP00000011231	ENSANAP00000026764	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Tet methylcytosine dioxygenase 2.	0.797
ADAMTS18	USH1C	ENSANAP00000011231	ENSANAP00000031314	ADAM metallopeptidase with thrombospondin type 1 motif 18.	USH1 protein network component harmonin.	0.631
ADAMTS18	USH2A	ENSANAP00000011231	ENSANAP00000012374	ADAM metallopeptidase with thrombospondin type 1 motif 18.	Usherin.	0.574
ARID4B	ADAMTS18	ENSANAP00000041612	ENSANAP00000011231	AT-rich interaction domain 4B.	ADAM metallopeptidase with thrombospondin type 1 motif 18.	0.642
ARID4B	DIAPH2	ENSANAP00000041612	ENSANAP00000020315	AT-rich interaction domain 4B.	Diaphanous related formin 2.	0.615
ARID4B	GASK1B	ENSANAP00000041612	ENSANAP00000038760	AT-rich interaction domain 4B.	Golgi associated kinase 1B.	0.605
ARID4B	GPR84	ENSANAP00000041612	ENSANAP00000000504	AT-rich interaction domain 4B.	G protein-coupled receptor 84.	0.603
ARID4B	HIVEP3	ENSANAP00000041612	ENSANAP00000042425	AT-rich interaction domain 4B.	Human immunodeficiency virus type I enhancer binding protein 3.	0.697
ARID4B	IRF3	ENSANAP00000041612	ENSANAP00000029921	AT-rich interaction domain 4B.	Interferon regulatory factor 3.	0.470
ARID4B	IRX3	ENSANAP00000041612	ENSANAP00000013066	AT-rich interaction domain 4B.	Iroquois homeobox 3.	0.630
ARID4B	KIF1B	ENSANAP00000041612	ENSANAP00000020456	AT-rich interaction domain 4B.	Kinesin family member 1B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.618