43 items (Bradyrhizobium japonicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APG13075.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	APG13123.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	APG13845.1	Phenylacetic acid degradation protein PaaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	APG14260.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	APG14339.1	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	APG15580.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	APG15589.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	APG15826.1	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	APG14019.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	APG07087.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	APG07271.1	acyl-CoA thioesterase II; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	APG07383.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	fabA_2	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length. (173 aa)
	APG07994.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	APG08026.1	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	APG08051.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	APG08052.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	APG08403.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	APG08429.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	APG08430.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	APG08552.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	APG08592.1	Protein dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	APG08628.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	APG08629.1	acyl-CoA thioester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. (134 aa)
	APG09090.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	APG09349.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	APG10634.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	APG10780.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	APG10808.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	APG10821.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	APG10973.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher. (131 aa)
	APG11219.1	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	APG11527.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	fabZ	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. (153 aa)
	APG11958.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	APG12271.1	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	APG12436.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	APG12531.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	APG12660.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	APG12668.1	Nodulation protein NodN; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	APG12676.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	APG12777.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	APG12846.1	beta-hydroxyacyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)

Your Current Organism:

Bradyrhizobium japonicum

NCBI taxonomy Id: 375
Other names: ATCC 10324, B. japonicum, Bradyrhizobium sp. BC-P14, Bradyrhizobium sp. SEMIA 511, Bradyrhizobium sp. SEMIA 6154, Bradyrhizobium sp. mas14, Bradyrhizobium sp. mas32, Bradyrhizobium sp. mas33, Bradyrhizobium sp. mas35, Bradyrhizobium sp. mas36, Bradyrhizobium sp. mas37, Bradyrhizobium sp. mas38, Bradyrhizobium sp. mas39, Bradyrhizobium sp. mas4, Bradyrhizobium sp. mas43, Bradyrhizobium sp. mas44, Bradyrhizobium sp. mas45, Bradyrhizobium sp. mas48, Bradyrhizobium sp. mas5, CCUG 27876, CIP 106093, DSM 30131, DSMZ 30131, HAMBI 2314, IFO 14783, JCM 20679, LMG 6138, LMG:6138, NBRC 14783, NRRL B-4507, NRRL L-241, Rhizobacterium japonicum, Rhizobium japonicum, USDA 6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APG07087.1	APG08429.1	BKD09_RS01990	BKD09_RS08810	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
APG07087.1	APG09090.1	BKD09_RS01990	BKD09_RS12170	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
APG07087.1	APG12777.1	BKD09_RS01990	BKD09_RS31000	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
APG07383.1	APG09090.1	BKD09_RS03485	BKD09_RS12170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
APG07383.1	APG11958.1	BKD09_RS03485	BKD09_RS26835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
APG07383.1	APG12668.1	BKD09_RS03485	BKD09_RS30450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nodulation protein NodN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
APG07383.1	APG15826.1	BKD09_RS03485	BKD09_RS46835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
APG08026.1	APG09090.1	BKD09_RS06740	BKD09_RS12170	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
APG08026.1	APG11958.1	BKD09_RS06740	BKD09_RS26835	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APG08026.1	APG12668.1	BKD09_RS06740	BKD09_RS30450	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nodulation protein NodN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
APG08051.1	APG08052.1	BKD09_RS06870	BKD09_RS06875	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
APG08052.1	APG08051.1	BKD09_RS06875	BKD09_RS06870	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
APG08052.1	APG12676.1	BKD09_RS06875	BKD09_RS30490	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
APG08429.1	APG07087.1	BKD09_RS08810	BKD09_RS01990	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
APG08429.1	APG08430.1	BKD09_RS08810	BKD09_RS08815	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
APG08430.1	APG08429.1	BKD09_RS08815	BKD09_RS08810	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
APG08430.1	APG09090.1	BKD09_RS08815	BKD09_RS12170	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
APG08552.1	APG11527.1	BKD09_RS09445	BKD09_RS24645	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
APG08628.1	APG08629.1	BKD09_RS09830	BKD09_RS09835	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher.	0.619
APG08629.1	APG08628.1	BKD09_RS09835	BKD09_RS09830	acyl-CoA thioester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Start codon location was manually corrected by using GenomeMatcher.	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619

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