STRINGSTRING
DVH24_027805 DVH24_027805 DVH24_027845 DVH24_027845 DVH24_030732 DVH24_030732 DVH24_027884 DVH24_027884 DVH24_036994 DVH24_036994 DVH24_027750 DVH24_027750 DVH24_031215 DVH24_031215 DVH24_013334 DVH24_013334 DVH24_037289 DVH24_037289 DVH24_016308 DVH24_016308 DVH24_025453 DVH24_025453 DVH24_025226 DVH24_025226 DVH24_015655 DVH24_015655 DVH24_018798 DVH24_018798 DVH24_016441 DVH24_016441 DVH24_029177 DVH24_029177 DVH24_016309 DVH24_016309 DVH24_019115 DVH24_019115 DVH24_002204 DVH24_002204 DVH24_001912 DVH24_001912 DVH24_041343 DVH24_041343 DVH24_002363 DVH24_002363 DVH24_001959 DVH24_001959 DVH24_002071 DVH24_002071 DVH24_041164 DVH24_041164 DVH24_036209 DVH24_036209 DVH24_035001 DVH24_035001 DVH24_004681 DVH24_004681 DVH24_003434 DVH24_003434 DVH24_005913 DVH24_005913 DVH24_003335 DVH24_003335 DVH24_003600 DVH24_003600 DVH24_003611 DVH24_003611 DVH24_042037 DVH24_042037 EIF6 EIF6 DVH24_017131 DVH24_017131 DVH24_016897 DVH24_016897 DVH24_028626 DVH24_028626 DVH24_017500 DVH24_017500 DVH24_021870 DVH24_021870 DVH24_021915 DVH24_021915 DVH24_000507 DVH24_000507 DVH24_042376 DVH24_042376 DVH24_042408 DVH24_042408 DVH24_037536 DVH24_037536 DVH24_000656 DVH24_000656 DVH24_032683 DVH24_032683 DVH24_035454 DVH24_035454 DVH24_031740 DVH24_031740 DVH24_032654 DVH24_032654 DVH24_020019 DVH24_020019 DVH24_032020 DVH24_032020 DVH24_033124 DVH24_033124 DVH24_013982 DVH24_013982 DVH24_033280 DVH24_033280 DVH24_023863 DVH24_023863 DVH24_013833 DVH24_013833 DVH24_024159 DVH24_024159 DVH24_024400 DVH24_024400 DVH24_024379 DVH24_024379 DVH24_024399 DVH24_024399 DVH24_023986 DVH24_023986 DVH24_024617 DVH24_024617 DVH24_008547 DVH24_008547 DVH24_010413 DVH24_010413 DVH24_035670 DVH24_035670 DVH24_035669 DVH24_035669 DVH24_030521 DVH24_030521 DVH24_010849 DVH24_010849 EIF6-2 EIF6-2 DVH24_001051 DVH24_001051 DVH24_001465 DVH24_001465 DVH24_021426 DVH24_021426 DVH24_021404 DVH24_021404 DVH24_021444 DVH24_021444 DVH24_000698 DVH24_000698 DVH24_003168 DVH24_003168 DVH24_003912 DVH24_003912 DVH24_014794 DVH24_014794 DVH24_038104 DVH24_038104 DVH24_038105 DVH24_038105 DVH24_039003 DVH24_039003 DVH24_038192 DVH24_038192 DVH24_003173 DVH24_003173 DVH24_004124 DVH24_004124 DVH24_025826 DVH24_025826 DVH24_005343 DVH24_005343 DVH24_017804 DVH24_017804 DVH24_005324 DVH24_005324 DVH24_023083 DVH24_023083 DVH24_026158 DVH24_026158 DVH24_023245 DVH24_023245 DVH24_022908 DVH24_022908 DVH24_022889 DVH24_022889
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DVH24_027805Brix domain-containing protein. (90 aa)
DVH24_027845Uncharacterized protein. (471 aa)
DVH24_030732Uncharacterized protein. (146 aa)
DVH24_027884Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (583 aa)
DVH24_036994Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (891 aa)
DVH24_027750CBF domain-containing protein. (1019 aa)
DVH24_03121560S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (173 aa)
DVH24_013334PUA domain-containing protein. (107 aa)
DVH24_037289Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (604 aa)
DVH24_016308Uncharacterized protein. (88 aa)
DVH24_025453PUM-HD domain-containing protein. (654 aa)
DVH24_025226Uncharacterized protein. (505 aa)
DVH24_015655Uncharacterized protein. (827 aa)
DVH24_018798Uncharacterized protein. (557 aa)
DVH24_016441Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (283 aa)
DVH24_029177Uncharacterized protein. (591 aa)
DVH24_016309Uncharacterized protein. (154 aa)
DVH24_019115Brix domain-containing protein. (366 aa)
DVH24_002204FtsJ domain-containing protein. (97 aa)
DVH24_001912Uncharacterized protein. (77 aa)
DVH24_041343PUM-HD domain-containing protein. (654 aa)
DVH24_002363Uncharacterized protein. (317 aa)
DVH24_001959Uncharacterized protein. (322 aa)
DVH24_002071Uncharacterized protein. (556 aa)
DVH24_041164Uncharacterized protein. (442 aa)
DVH24_036209Peptidase_M24 domain-containing protein. (395 aa)
DVH24_035001Brix domain-containing protein. (363 aa)
DVH24_004681C2H2-type domain-containing protein. (88 aa)
DVH24_003434Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (676 aa)
DVH24_005913Uncharacterized protein. (136 aa)
DVH24_003335Protein MAK16 homolog; Belongs to the MAK16 family. (300 aa)
DVH24_003600Brix domain-containing protein. (335 aa)
DVH24_003611Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (562 aa)
DVH24_042037Uncharacterized protein. (765 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
DVH24_017131Uncharacterized protein. (219 aa)
DVH24_016897Uncharacterized protein. (234 aa)
DVH24_028626CP-type G domain-containing protein. (598 aa)
DVH24_017500WD_REPEATS_REGION domain-containing protein. (523 aa)
DVH24_021870Uncharacterized protein. (1174 aa)
DVH24_021915Uncharacterized protein. (266 aa)
DVH24_000507CBF domain-containing protein. (1009 aa)
DVH24_042376Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (861 aa)
DVH24_042408Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (714 aa)
DVH24_037536Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (559 aa)
DVH24_000656FtsJ domain-containing protein. (124 aa)
DVH24_032683Uncharacterized protein. (475 aa)
DVH24_035454WD_REPEATS_REGION domain-containing protein. (323 aa)
DVH24_031740Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (605 aa)
DVH24_032654PUA domain-containing protein. (466 aa)
DVH24_020019Uncharacterized protein. (242 aa)
DVH24_032020Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (3623 aa)
DVH24_033124RRM domain-containing protein. (236 aa)
DVH24_013982DEAD-box ATP-dependent RNA helicase 29. (778 aa)
DVH24_033280Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (268 aa)
DVH24_023863Brix domain-containing protein. (352 aa)
DVH24_013833Uncharacterized protein. (419 aa)
DVH24_024159FtsJ domain-containing protein. (232 aa)
DVH24_024400Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (381 aa)
DVH24_024379RNA helicase. (546 aa)
DVH24_024399Uncharacterized protein. (167 aa)
DVH24_023986Uncharacterized protein. (716 aa)
DVH24_024617Uncharacterized protein. (496 aa)
DVH24_008547WD_REPEATS_REGION domain-containing protein. (466 aa)
DVH24_010413CP-type G domain-containing protein. (592 aa)
DVH24_035670NOG1_N domain-containing protein. (124 aa)
DVH24_035669OBG-type G domain-containing protein. (535 aa)
DVH24_030521Uncharacterized protein. (156 aa)
DVH24_010849Uncharacterized protein. (1188 aa)
EIF6-2Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
DVH24_001051SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (661 aa)
DVH24_001465C2H2-type domain-containing protein. (88 aa)
DVH24_021426WD_REPEATS_REGION domain-containing protein. (776 aa)
DVH24_021404Uncharacterized protein. (976 aa)
DVH24_021444Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (860 aa)
DVH24_00069860S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (520 aa)
DVH24_003168Uncharacterized protein. (154 aa)
DVH24_00391260S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
DVH24_014794Peptidase_M24 domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (723 aa)
DVH24_038104Uncharacterized protein. (99 aa)
DVH24_038105Uncharacterized protein. (91 aa)
DVH24_039003TRASH domain-containing protein. (162 aa)
DVH24_038192SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (1291 aa)
DVH24_003173Brix domain-containing protein. (354 aa)
DVH24_004124Ribosomal_L28e domain-containing protein. (441 aa)
DVH24_025826Uncharacterized protein. (506 aa)
DVH24_005343Brix domain-containing protein. (320 aa)
DVH24_017804Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (489 aa)
DVH24_005324Uncharacterized protein. (274 aa)
DVH24_023083FtsJ domain-containing protein. (251 aa)
DVH24_026158Uncharacterized protein. (1134 aa)
DVH24_023245Uncharacterized protein. (752 aa)
DVH24_022908RNA helicase. (591 aa)
DVH24_022889Uncharacterized protein. (656 aa)
Your Current Organism:
Malus domestica
NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple
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