19 items (Malus domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	DVH24_030732	Uncharacterized protein. (146 aa)
	DVH24_036994	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (891 aa)
	DVH24_037289	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (604 aa)
	DVH24_016308	Uncharacterized protein. (88 aa)
	DVH24_002071	Uncharacterized protein. (556 aa)
	DVH24_005913	Uncharacterized protein. (136 aa)
	DVH24_003335	Protein MAK16 homolog; Belongs to the MAK16 family. (300 aa)
	DVH24_021870	Uncharacterized protein. (1174 aa)
	DVH24_032683	Uncharacterized protein. (475 aa)
	DVH24_033124	RRM domain-containing protein. (236 aa)
	DVH24_033280	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (268 aa)
	DVH24_023863	Brix domain-containing protein. (352 aa)
	DVH24_024617	Uncharacterized protein. (496 aa)
	DVH24_008547	WD_REPEATS_REGION domain-containing protein. (466 aa)
	DVH24_010413	CP-type G domain-containing protein. (592 aa)
	DVH24_021426	WD_REPEATS_REGION domain-containing protein. (776 aa)
	DVH24_003912	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	DVH24_003173	Brix domain-containing protein. (354 aa)
	DVH24_005324	Uncharacterized protein. (274 aa)

Your Current Organism:

Malus domestica

NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVH24_002071	DVH24_003173	A0A498IBR3	A0A498KB71	Uncharacterized protein.	Brix domain-containing protein.	0.988
DVH24_002071	DVH24_003335	A0A498IBR3	A0A498IL96	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.979
DVH24_002071	DVH24_003912	A0A498IBR3	A0A498K4S4	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.957
DVH24_002071	DVH24_005324	A0A498IBR3	A0A498KK50	Uncharacterized protein.	Uncharacterized protein.	0.970
DVH24_002071	DVH24_005913	A0A498IBR3	A0A498IKF6	Uncharacterized protein.	Uncharacterized protein.	0.952
DVH24_002071	DVH24_008547	A0A498IBR3	A0A498JMF4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
DVH24_002071	DVH24_010413	A0A498IBR3	A0A498JQN2	Uncharacterized protein.	CP-type G domain-containing protein.	0.510
DVH24_002071	DVH24_016308	A0A498IBR3	A0A498HPV5	Uncharacterized protein.	Uncharacterized protein.	0.972
DVH24_002071	DVH24_021426	A0A498IBR3	A0A498K130	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.985
DVH24_002071	DVH24_021870	A0A498IBR3	A0A498IWG4	Uncharacterized protein.	Uncharacterized protein.	0.963
DVH24_002071	DVH24_023863	A0A498IBR3	A0A498JEA4	Uncharacterized protein.	Brix domain-containing protein.	0.970
DVH24_002071	DVH24_024617	A0A498IBR3	A0A498JM88	Uncharacterized protein.	Uncharacterized protein.	0.996
DVH24_002071	DVH24_030732	A0A498IBR3	A0A498HBJ3	Uncharacterized protein.	Uncharacterized protein.	0.946
DVH24_002071	DVH24_032683	A0A498IBR3	A0A498J545	Uncharacterized protein.	Uncharacterized protein.	0.983
DVH24_002071	DVH24_033124	A0A498IBR3	A0A498J958	Uncharacterized protein.	RRM domain-containing protein.	0.972
DVH24_002071	DVH24_033280	A0A498IBR3	A0A498JEA3	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.833
DVH24_002071	DVH24_036994	A0A498IBR3	A0A498HEJ8	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.975
DVH24_002071	DVH24_037289	A0A498IBR3	A0A498HJ34	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.946
DVH24_003173	DVH24_002071	A0A498KB71	A0A498IBR3	Brix domain-containing protein.	Uncharacterized protein.	0.988
DVH24_003173	DVH24_003335	A0A498KB71	A0A498IL96	Brix domain-containing protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.976

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