12 items (Malus domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	DVH24_027845	Uncharacterized protein. (471 aa)
	DVH24_031215	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (173 aa)
	DVH24_018798	Uncharacterized protein. (557 aa)
	DVH24_016309	Uncharacterized protein. (154 aa)
	DVH24_003600	Brix domain-containing protein. (335 aa)
	DVH24_028626	CP-type G domain-containing protein. (598 aa)
	DVH24_042408	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (714 aa)
	DVH24_031740	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (605 aa)
	DVH24_032020	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (3623 aa)
	DVH24_010849	Uncharacterized protein. (1188 aa)
	DVH24_004124	Ribosomal_L28e domain-containing protein. (441 aa)
	DVH24_005343	Brix domain-containing protein. (320 aa)

Your Current Organism:

Malus domestica

NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVH24_003600	DVH24_004124	A0A498IM99	A0A498KDA6	Brix domain-containing protein.	Ribosomal_L28e domain-containing protein.	0.976
DVH24_003600	DVH24_005343	A0A498IM99	A0A498KGY1	Brix domain-containing protein.	Brix domain-containing protein.	0.984
DVH24_003600	DVH24_010849	A0A498IM99	A0A498JXM7	Brix domain-containing protein.	Uncharacterized protein.	0.987
DVH24_003600	DVH24_016309	A0A498IM99	A0A498HVF1	Brix domain-containing protein.	Uncharacterized protein.	0.986
DVH24_003600	DVH24_018798	A0A498IM99	A0A498HRH3	Brix domain-containing protein.	Uncharacterized protein.	0.988
DVH24_003600	DVH24_027845	A0A498IM99	A0A498H8H2	Brix domain-containing protein.	Uncharacterized protein.	0.984
DVH24_003600	DVH24_028626	A0A498IM99	A0A498IV45	Brix domain-containing protein.	CP-type G domain-containing protein.	0.983
DVH24_003600	DVH24_031215	A0A498IM99	A0A498HG83	Brix domain-containing protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.990
DVH24_003600	DVH24_031740	A0A498IM99	A0A498J6G8	Brix domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.962
DVH24_003600	DVH24_032020	A0A498IM99	A0A498J784	Brix domain-containing protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.987
DVH24_003600	DVH24_042408	A0A498IM99	A0A498J1A3	Brix domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.983
DVH24_004124	DVH24_003600	A0A498KDA6	A0A498IM99	Ribosomal_L28e domain-containing protein.	Brix domain-containing protein.	0.976
DVH24_004124	DVH24_005343	A0A498KDA6	A0A498KGY1	Ribosomal_L28e domain-containing protein.	Brix domain-containing protein.	0.972
DVH24_004124	DVH24_010849	A0A498KDA6	A0A498JXM7	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.980
DVH24_004124	DVH24_016309	A0A498KDA6	A0A498HVF1	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.980
DVH24_004124	DVH24_018798	A0A498KDA6	A0A498HRH3	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.979
DVH24_004124	DVH24_027845	A0A498KDA6	A0A498H8H2	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.967
DVH24_004124	DVH24_028626	A0A498KDA6	A0A498IV45	Ribosomal_L28e domain-containing protein.	CP-type G domain-containing protein.	0.979
DVH24_004124	DVH24_031215	A0A498KDA6	A0A498HG83	Ribosomal_L28e domain-containing protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.966
DVH24_004124	DVH24_031740	A0A498KDA6	A0A498J6G8	Ribosomal_L28e domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.956

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