48 items (Malus domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DVH24_035455	WD_REPEATS_REGION domain-containing protein. (118 aa)
	DVH24_032600	Brix domain-containing protein. (112 aa)
	DVH24_020019	Uncharacterized protein. (242 aa)
	DVH24_035454	WD_REPEATS_REGION domain-containing protein. (323 aa)
	DVH24_034477	Ribosomal_L6e_N domain-containing protein. (111 aa)
	DVH24_021955	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (125 aa)
	DVH24_037685	Uncharacterized protein. (1005 aa)
	DVH24_041783	Ribosomal_L16 domain-containing protein. (221 aa)
	DVH24_032776	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (197 aa)
	DVH24_003600	Brix domain-containing protein. (335 aa)
	DVH24_027285	Brix domain-containing protein. (344 aa)
	DVH24_005088	Ribosomal_L6e_N domain-containing protein. (233 aa)
	DVH24_035001	Brix domain-containing protein. (363 aa)
	DVH24_019115	Brix domain-containing protein. (366 aa)
	DVH24_019507	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (233 aa)
	DVH24_016417	Ribosomal_L18_c domain-containing protein. (299 aa)
	DVH24_029401	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (233 aa)
	DVH24_016441	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (283 aa)
	DVH24_037394	Brix domain-containing protein. (412 aa)
	DVH24_030782	WD_REPEATS_REGION domain-containing protein. (475 aa)
	DVH24_027805	Brix domain-containing protein. (90 aa)
	DVH24_024462	Ribosomal_L16 domain-containing protein. (224 aa)
	DVH24_016183	Ribosomal_L6e_N domain-containing protein. (233 aa)
	DVH24_006711	Ribosomal_L6e_N domain-containing protein. (233 aa)
	DVH24_018060	Ribosomal_L6e_N domain-containing protein. (188 aa)
	DVH24_042528	Ribosomal_L6e_N domain-containing protein. (213 aa)
	DVH24_006666	Uncharacterized protein. (158 aa)
	DVH24_006626	Ribosomal_L6e_N domain-containing protein. (99 aa)
	DVH24_023149	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (457 aa)
	DVH24_022889	Uncharacterized protein. (656 aa)
	DVH24_022978	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (321 aa)
	DVH24_022820	Ribosomal_L16 domain-containing protein. (268 aa)
	DVH24_022974	RL10P_insert domain-containing protein. (198 aa)
	DVH24_006619	WD_REPEATS_REGION domain-containing protein. (477 aa)
	DVH24_033280	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (268 aa)
	DVH24_006667	Uncharacterized protein. (488 aa)
	DVH24_038322	Ribosomal_L16 domain-containing protein. (262 aa)
	DVH24_002655	Brix domain-containing protein. (343 aa)
	DVH24_006668	Uncharacterized protein. (208 aa)
	DVH24_003173	Brix domain-containing protein. (354 aa)
	DVH24_030505	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5393 aa)
	DVH24_001014	RL10P_insert domain-containing protein. (201 aa)
	DVH24_037787	Uncharacterized protein. (983 aa)
	DVH24_024086	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (990 aa)
	DVH24_023897	Uncharacterized protein. (136 aa)
	DVH24_024399	Uncharacterized protein. (167 aa)
	DVH24_024400	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (381 aa)
	DVH24_024280	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (321 aa)

Your Current Organism:

Malus domestica

NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVH24_001014	DVH24_002655	A0A498JY03	A0A498K5J7	RL10P_insert domain-containing protein.	Brix domain-containing protein.	0.408
DVH24_001014	DVH24_003173	A0A498JY03	A0A498KB71	RL10P_insert domain-containing protein.	Brix domain-containing protein.	0.856
DVH24_001014	DVH24_003600	A0A498JY03	A0A498IM99	RL10P_insert domain-containing protein.	Brix domain-containing protein.	0.856
DVH24_001014	DVH24_005088	A0A498JY03	A0A498IGC3	RL10P_insert domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.857
DVH24_001014	DVH24_006619	A0A498JY03	A0A498KIG0	RL10P_insert domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.548
DVH24_001014	DVH24_006626	A0A498JY03	A0A498KAY0	RL10P_insert domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.857
DVH24_001014	DVH24_006666	A0A498JY03	A0A498KB19	RL10P_insert domain-containing protein.	Uncharacterized protein.	0.857
DVH24_001014	DVH24_006667	A0A498JY03	A0A498KAP4	RL10P_insert domain-containing protein.	Uncharacterized protein.	0.857
DVH24_001014	DVH24_006668	A0A498JY03	A0A498KDC5	RL10P_insert domain-containing protein.	Uncharacterized protein.	0.857
DVH24_001014	DVH24_006711	A0A498JY03	A0A498KGD2	RL10P_insert domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.857
DVH24_001014	DVH24_016183	A0A498JY03	A0A498JG53	RL10P_insert domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.857
DVH24_001014	DVH24_016417	A0A498JY03	A0A498HVQ8	RL10P_insert domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.997
DVH24_001014	DVH24_018060	A0A498JY03	A0A498KEJ0	RL10P_insert domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.857
DVH24_001014	DVH24_019115	A0A498JY03	A0A498I2S5	RL10P_insert domain-containing protein.	Brix domain-containing protein.	0.865
DVH24_001014	DVH24_019507	A0A498JY03	A0A498I146	RL10P_insert domain-containing protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.857
DVH24_001014	DVH24_020019	A0A498JY03	A0A498J731	RL10P_insert domain-containing protein.	Uncharacterized protein.	0.502
DVH24_001014	DVH24_021955	A0A498JY03	A0A498IYB1	RL10P_insert domain-containing protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.935
DVH24_001014	DVH24_022820	A0A498JY03	A0A498KMF5	RL10P_insert domain-containing protein.	Ribosomal_L16 domain-containing protein.	0.963
DVH24_001014	DVH24_022889	A0A498JY03	A0A498KSS2	RL10P_insert domain-containing protein.	Uncharacterized protein.	0.502
DVH24_001014	DVH24_023149	A0A498JY03	A0A498KTF6	RL10P_insert domain-containing protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.975

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