STRINGSTRING
rimK rimK RD1_3194 RD1_3194 RD1_3196 RD1_3196 RD1_3197 RD1_3197 aspC-2 aspC-2 RD1_3203 RD1_3203 RD1_3206 RD1_3206
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rimKRibosomal protein S6 modification protein (C terminal domain). (459 aa)
RD1_3194Hypothetical protein. (60 aa)
RD1_3196Conserved hypothetical protein. (163 aa)
RD1_3197Cold shock protein. (178 aa)
aspC-2Aspartate aminotransferase, putative. (391 aa)
RD1_3203Peptidyl-prolyl cis-trans isomerse D, putative. (612 aa)
RD1_3206Conserved hypothetical protein. (345 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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