STRINGSTRING
RD1_0479 RD1_0479 RD1_0592 RD1_0592 RD1_0593 RD1_0593 RD1_0594 RD1_0594 RD1_0595 RD1_0595 RD1_1123 RD1_1123 RD1_1124 RD1_1124 aggA aggA frpC frpC frpC-2 frpC-2 RD1_3725 RD1_3725 RD1_3726 RD1_3726 lktD lktD RD1_4034 RD1_4034
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD1_0479Calcium binding hemolysin, putative. (1098 aa)
RD1_0592Putative HlyD family secretion protein. (453 aa)
RD1_0593Putative cyclosin secreting ABC transporter, ATP binding protein. (745 aa)
RD1_0594ABC transporter, ATP-binding permease protein, putative. (552 aa)
RD1_0595Type I secretion target domain protein, putative. (1021 aa)
RD1_1123HlyD family secretion protein, putative. (435 aa)
RD1_1124Toxin secretion ABC transporter, ATP-binding component, putative. (756 aa)
aggAAgglutination protein, putative. (470 aa)
frpCIron-regulated protein FrpC, putative. (1138 aa)
frpC-2Iron-regulated protein frpC, putative. (2666 aa)
RD1_3725Toxin secretion ABC transporter, ATP binding protein, putative. (575 aa)
RD1_3726Toxin secretion ABC transporter, ATP binding component, putative. (696 aa)
lktDLeukotoxin secretion protein D, putative. (395 aa)
RD1_4034Probable type I secretion protein. (308 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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