STRINGSTRING
RD1_0517 RD1_0517 RD1_0518 RD1_0518 RD1_0519 RD1_0519 RD1_0521 RD1_0521 gltK gltK RD1_2553 RD1_2553 RD1_3619 RD1_3619 RD1_3620 RD1_3620 RD1_3621 RD1_3621 RD1_3622 RD1_3622 RD1_3740 RD1_3740 RD1_3742 RD1_3742 RD1_3743 RD1_3743
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD1_0517Sugar ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily. (367 aa)
RD1_0518Sugar ABC transporter, permease protein, putative. (293 aa)
RD1_0519Sugar ABC transporter, permease protein, putative. (297 aa)
RD1_0521Putative sugar ABC transporter, periplasmic sugar-binding protein. (416 aa)
gltKGlucose ABC transporter, ATP-binding subunit. (202 aa)
RD1_2553ABC transporter, permease protein, putative. (142 aa)
RD1_3619ABC transporter, permease protein, putative. (307 aa)
RD1_3620Sugar ABC transporter permease protein, putative. (297 aa)
RD1_3621ABC transporter, substrate-binding protein, putative. (473 aa)
RD1_3622SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (359 aa)
RD1_3740Solute-binding protein, putative. (543 aa)
RD1_3742Sugar ABC transporter, permease protein, putative. (325 aa)
RD1_3743Sugar ABC transporter, permease protein, putative. (291 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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