(23 nodes) Mixed, incl. Periplasmic binding protein, and Pentose transmembrane transport network (Roseobacter denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RD1_0864	Ribose ABC transporter, periplasmic binding component, putative. (378 aa)
	RD1_0865	Sugar ABC transporter, ATP-binding protein, putative. (519 aa)
	RD1_0866	Ribose ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (351 aa)
	rbsC	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
	gnl	Gluconolactonase, putative. (305 aa)
	RD1_2210	Conserved hypothetical protein. (208 aa)
	RD1_2211	Sugar ABC transporter, ATP-binding protein, putative. (257 aa)
	rbcS	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (353 aa)
	RD1_2213	Sugar ABC transporter protein, putative. (338 aa)
	frcR	Transcription regulator, ROK family FrcR, putative. (402 aa)
	RD1_3073	Hypothetical protein. (42 aa)
	RD1_3074	Hypothetical protein. (31 aa)
	RD1_3075	Carbohydrate kinases, putative. (456 aa)
	rhaM	Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose. (105 aa)
	RD1_3077	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (333 aa)
	rbsC-3	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (320 aa)
	rbsA	Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (511 aa)
	RD1_3080	Sugar ABC transporter, ATP binding protein, putative. (330 aa)
	RD1_3082	Transcription regulator DeoR family, putative. (270 aa)
	RD1_3083	Oxidoreductase, putative. (700 aa)
	RD1_3084	Conserved hypothetical protein. (424 aa)
	torT	Periplasmic protein TorT. (336 aa)
	gnl-2	Gluconolactonase, putative. (310 aa)

Your Current Organism:

Roseobacter denitrificans

NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RD1_0864	RD1_0865	RD1_0864	RD1_0865	Ribose ABC transporter, periplasmic binding component, putative.	Sugar ABC transporter, ATP-binding protein, putative.	0.976
RD1_0864	RD1_0866	RD1_0864	RD1_0866	Ribose ABC transporter, periplasmic binding component, putative.	Ribose ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	0.986
RD1_0864	RD1_2211	RD1_0864	RD1_2211	Ribose ABC transporter, periplasmic binding component, putative.	Sugar ABC transporter, ATP-binding protein, putative.	0.542
RD1_0864	RD1_3077	RD1_0864	RD1_3077	Ribose ABC transporter, periplasmic binding component, putative.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.548
RD1_0864	gnl	RD1_0864	RD1_0868	Ribose ABC transporter, periplasmic binding component, putative.	Gluconolactonase, putative.	0.715
RD1_0864	rbcS	RD1_0864	RD1_2212	Ribose ABC transporter, periplasmic binding component, putative.	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.610
RD1_0864	rbsA	RD1_0864	RD1_3079	Ribose ABC transporter, periplasmic binding component, putative.	Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.523
RD1_0864	rbsC	RD1_0864	RD1_0867	Ribose ABC transporter, periplasmic binding component, putative.	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.986
RD1_0864	rbsC-3	RD1_0864	RD1_3078	Ribose ABC transporter, periplasmic binding component, putative.	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.556
RD1_0865	RD1_0864	RD1_0865	RD1_0864	Sugar ABC transporter, ATP-binding protein, putative.	Ribose ABC transporter, periplasmic binding component, putative.	0.976
RD1_0865	RD1_0866	RD1_0865	RD1_0866	Sugar ABC transporter, ATP-binding protein, putative.	Ribose ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	0.995
RD1_0865	RD1_2213	RD1_0865	RD1_2213	Sugar ABC transporter, ATP-binding protein, putative.	Sugar ABC transporter protein, putative.	0.502
RD1_0865	RD1_3077	RD1_0865	RD1_3077	Sugar ABC transporter, ATP-binding protein, putative.	Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.873
RD1_0865	RD1_3080	RD1_0865	RD1_3080	Sugar ABC transporter, ATP-binding protein, putative.	Sugar ABC transporter, ATP binding protein, putative.	0.499
RD1_0865	gnl	RD1_0865	RD1_0868	Sugar ABC transporter, ATP-binding protein, putative.	Gluconolactonase, putative.	0.754
RD1_0865	rbcS	RD1_0865	RD1_2212	Sugar ABC transporter, ATP-binding protein, putative.	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.877
RD1_0865	rbsC	RD1_0865	RD1_0867	Sugar ABC transporter, ATP-binding protein, putative.	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.993
RD1_0865	rbsC-3	RD1_0865	RD1_3078	Sugar ABC transporter, ATP-binding protein, putative.	Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.928
RD1_0865	torT	RD1_0865	RD1_3668	Sugar ABC transporter, ATP-binding protein, putative.	Periplasmic protein TorT.	0.436
RD1_0866	RD1_0864	RD1_0866	RD1_0864	Ribose ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	Ribose ABC transporter, periplasmic binding component, putative.	0.986

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