STRINGSTRING
RD1_0854 RD1_0854 RD1_0855 RD1_0855 RD1_0856 RD1_0856 RD1_0858 RD1_0858 RD1_0859 RD1_0859 RD1_1501 RD1_1501 RD1_1502 RD1_1502 RD1_1503 RD1_1503 RD1_1504 RD1_1504 RD1_1505 RD1_1505 RD1_3587 RD1_3587 RD1_3588 RD1_3588 RD1_3589 RD1_3589 RD1_3590 RD1_3590 RD1_3591 RD1_3591
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD1_0854Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein. (395 aa)
RD1_0855Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (289 aa)
RD1_0856Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (325 aa)
RD1_0858Branched-chain amino acid ABC transporter, ATP-binding protein. (260 aa)
RD1_0859Branched-chain amino acid ABC transporter, ATP-binding protein. (240 aa)
RD1_1501Branched-chain amino acid ABC transporter, ATP-binding protein. (236 aa)
RD1_1502Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (383 aa)
RD1_1503Branched-chain amino acid ABC transporter, ATP-binding protein. (234 aa)
RD1_1504Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (298 aa)
RD1_1505Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (341 aa)
RD1_3587Branched-chain amino acid ABC transporter, ATP-binding protein, putative. (242 aa)
RD1_3588Branched chain amino acid ABC transporter, ATP-binding protein, putative. (244 aa)
RD1_3589Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (304 aa)
RD1_3590Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (342 aa)
RD1_3591Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (389 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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