(25 nodes) Amino acid transmembrane transporter activity network (Roseobacter denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RD1_0021	Homoserine/lactone efflux protein. (207 aa)
	RD1_0211	LysE family transport protein. (206 aa)
	RD1_0542	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
	RD1_0602	LysE family transport protein. (209 aa)
	RD1_0638	Na(+)-linked D-alanine glycine permease. (517 aa)
	RD1_0641	LysE family transport protein, putative. (196 aa)
	RD1_0706	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (358 aa)
	RD1_0856	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (325 aa)
	RD1_0999	LysE family transport protein. (198 aa)
	rhtC	Threonine efflux protein, putative. (208 aa)
	RD1_1417	Threonine efflux protein. (212 aa)
	RD1_1505	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (341 aa)
	RD1_1899	Amino acid ABC transporter, ATP-binding protein. (258 aa)
	RD1_1953	Integral membrane protein, putative. (306 aa)
	RD1_2149	LysE family protein. (206 aa)
	RD1_2164	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (418 aa)
	RD1_2184	Amino acid ABC transporter, ATP-binding protein, putative. (245 aa)
	RD1_2626	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (438 aa)
	RD1_2662	LysE family transport protein. (200 aa)
	RD1_2782	Transmembrane drug/metabolite transporter family protein, putative. (303 aa)
	RD1_2845	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (399 aa)
	RD1_3200	Threonine efflux protein. (204 aa)
	RD1_3424	LysE family protein. (203 aa)
	RD1_3590	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (342 aa)
	RD1_3599	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (377 aa)

Your Current Organism:

Roseobacter denitrificans

NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RD1_0021	RD1_0602	RD1_0021	RD1_0602	Homoserine/lactone efflux protein.	LysE family transport protein.	0.608
RD1_0021	RD1_1417	RD1_0021	RD1_1417	Homoserine/lactone efflux protein.	Threonine efflux protein.	0.566
RD1_0021	RD1_3200	RD1_0021	RD1_3200	Homoserine/lactone efflux protein.	Threonine efflux protein.	0.650
RD1_0021	RD1_3424	RD1_0021	RD1_3424	Homoserine/lactone efflux protein.	LysE family protein.	0.662
RD1_0021	rhtC	RD1_0021	RD1_1363	Homoserine/lactone efflux protein.	Threonine efflux protein, putative.	0.622
RD1_0542	RD1_1899	RD1_0542	RD1_1899	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	Amino acid ABC transporter, ATP-binding protein.	0.410
RD1_0542	RD1_2184	RD1_0542	RD1_2184	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	Amino acid ABC transporter, ATP-binding protein, putative.	0.580
RD1_0602	RD1_0021	RD1_0602	RD1_0021	LysE family transport protein.	Homoserine/lactone efflux protein.	0.608
RD1_0602	RD1_2662	RD1_0602	RD1_2662	LysE family transport protein.	LysE family transport protein.	0.402
RD1_0638	RD1_0641	RD1_0638	RD1_0641	Na(+)-linked D-alanine glycine permease.	LysE family transport protein, putative.	0.424
RD1_0641	RD1_0638	RD1_0641	RD1_0638	LysE family transport protein, putative.	Na(+)-linked D-alanine glycine permease.	0.424
RD1_0856	RD1_1505	RD1_0856	RD1_1505	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	0.714
RD1_0856	RD1_2184	RD1_0856	RD1_2184	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	Amino acid ABC transporter, ATP-binding protein, putative.	0.437
RD1_1417	RD1_0021	RD1_1417	RD1_0021	Threonine efflux protein.	Homoserine/lactone efflux protein.	0.566
RD1_1417	RD1_2149	RD1_1417	RD1_2149	Threonine efflux protein.	LysE family protein.	0.777
RD1_1417	RD1_2662	RD1_1417	RD1_2662	Threonine efflux protein.	LysE family transport protein.	0.450
RD1_1505	RD1_0856	RD1_1505	RD1_0856	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.714
RD1_1899	RD1_0542	RD1_1899	RD1_0542	Amino acid ABC transporter, ATP-binding protein.	Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.	0.410
RD1_2149	RD1_1417	RD1_2149	RD1_1417	LysE family protein.	Threonine efflux protein.	0.777
RD1_2149	RD1_2662	RD1_2149	RD1_2662	LysE family protein.	LysE family transport protein.	0.560

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