(55 nodes) Outer membrane-bounded periplasmic space network (Roseobacter denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RD1_3491	Hypothetical protein. (100 aa)
	RD1_3591	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (389 aa)
	RD1_3596	ABC transporter, substrate-binding protein, putative. (423 aa)
	cutE	Apolipoprotein N-acyltransferase, putative; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (496 aa)
	RD1_3870	Conserved hypothetical protein. (337 aa)
	mepA	Murein endopeptidase. (309 aa)
	RD1_0334	M23 peptidase domain protein, putative. (380 aa)
	RD1_0206	Conserved hypothetical protein. (135 aa)
	RD1_0191	Protein-disulfide isomerase, putative. (246 aa)
	RD1_0181	Transglycosylase, putative. (451 aa)
	RD1_0099	Conserved hypothetical protein. (116 aa)
	RD1_0078	Lipoprotein, putative. (186 aa)
	ggtA	Gamma-glutamyltranspeptidase, putative. (525 aa)
	RD1_1228	Putative acyl-CoA thioesterase. (212 aa)
	RD1_1263	ABC transporter, periplasmic substrate-binding protein, putative. (643 aa)
	RD1_1329	Lytic murein transglycosylase, putative. (390 aa)
	RD1_1370	Conserved domain protein. (131 aa)
	RD1_1502	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (383 aa)
	RD1_1839	Glycine betaine/L-proline ABC transporter, substrate binding protein, putative. (319 aa)
	RD1_1920	HflK protein, putative; HflC and HflK could encode or regulate a protease. (387 aa)
	RD1_2059	Conserved hypothetical protein. (427 aa)
	cpoB	Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (281 aa)
	mpp	Peptidase, M16 family, putative; Belongs to the peptidase M16 family. (420 aa)
	RD1_2166	ABC transporter, substrate-binding protein, putative. (447 aa)
	ggtA-2	Gamma-glutamyltranspeptidase, putative. (531 aa)
	RD1_2216	Hypothetical protein. (115 aa)
	RD1_2250	Sensor histidine kinase, putative. (441 aa)
	RD1_2344	Hypothetical protein. (312 aa)
	RD1_2410	Spermidine/putrescine ABC transporter, substrate-binding protein. (351 aa)
	RD1_2617	Conserved hypothetical protein. (189 aa)
	RD1_2631	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein. (396 aa)
	RD1_2633	Glucose dehydrogenase, putative. (362 aa)
	RD1_2673	Iron ABC transporter, periplasmic iron-binding protein, putative. (386 aa)
	RD1_2741	ABC transporter, periplasmic substrate-binding protein, putative. (605 aa)
	RD1_2824	Outer membrane protein, putative. (249 aa)
	RD1_2843	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (450 aa)
	modA	Molybdate ABC transporter, periplasmic molybdate-binding protein. (282 aa)
	RD1_3096	ABC transporter, periplasmic. (329 aa)
	RD1_3256	Hypothetical protein. (109 aa)
	ectC	Ectoine synthase, putative. (128 aa)
	ggt	Gamma-glutamyltranspeptidase. (592 aa)
	RD1_0557	Thiamin ABC transporter, periplasmic thiamin-binding protein. (326 aa)
	RD1_0631	ABC transporter, periplasmic substrate-binding protein, putative. (433 aa)
	pqqE	Peptidase, M16 family, putative; Belongs to the peptidase M16 family. (443 aa)
	RD1_0708	Conserved hypothetical protein. (427 aa)
	RD1_0752	ABC transporter, periplasmic. (311 aa)
	RD1_0854	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein. (395 aa)
	RD1_0898	Conserved hypothetical protein. (390 aa)
	RD1_0939	Toluene tolerance family protein, putative. (199 aa)
	RD1_0971	Transglycosylase, Slt family. (637 aa)
	RD1_1042	Ribonuclease T2 family; Belongs to the RNase T2 family. (209 aa)
	RD1_1120	Peptidoglycan binding domain protein. (377 aa)
	RD1_1189	Conserved hypothetical protein. (389 aa)
	dcp	Dipeptidyl carboxypeptidase, putative. (671 aa)
	RD1_0540	ABC transporter substrate binding protei. (376 aa)

Your Current Organism:

Roseobacter denitrificans

NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RD1_0334	RD1_1189	RD1_0334	RD1_1189	M23 peptidase domain protein, putative.	Conserved hypothetical protein.	0.425
RD1_0334	cpoB	RD1_0334	RD1_2099	M23 peptidase domain protein, putative.	Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.	0.682
RD1_0540	RD1_0631	RD1_0540	RD1_0631	ABC transporter substrate binding protei.	ABC transporter, periplasmic substrate-binding protein, putative.	0.900
RD1_0540	RD1_0708	RD1_0540	RD1_0708	ABC transporter substrate binding protei.	Conserved hypothetical protein.	0.900
RD1_0540	RD1_0854	RD1_0540	RD1_0854	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0540	RD1_1502	RD1_0540	RD1_1502	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0540	RD1_2631	RD1_0540	RD1_2631	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0540	RD1_2843	RD1_0540	RD1_2843	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0540	RD1_3591	RD1_0540	RD1_3591	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0631	RD1_0540	RD1_0631	RD1_0540	ABC transporter, periplasmic substrate-binding protein, putative.	ABC transporter substrate binding protei.	0.900
RD1_0631	RD1_0708	RD1_0631	RD1_0708	ABC transporter, periplasmic substrate-binding protein, putative.	Conserved hypothetical protein.	0.900
RD1_0631	RD1_0854	RD1_0631	RD1_0854	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0631	RD1_1502	RD1_0631	RD1_1502	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0631	RD1_2631	RD1_0631	RD1_2631	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0631	RD1_2843	RD1_0631	RD1_2843	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0631	RD1_3591	RD1_0631	RD1_3591	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0708	RD1_0540	RD1_0708	RD1_0540	Conserved hypothetical protein.	ABC transporter substrate binding protei.	0.900
RD1_0708	RD1_0631	RD1_0708	RD1_0631	Conserved hypothetical protein.	ABC transporter, periplasmic substrate-binding protein, putative.	0.900
RD1_0708	RD1_0854	RD1_0708	RD1_0854	Conserved hypothetical protein.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0708	RD1_1502	RD1_0708	RD1_1502	Conserved hypothetical protein.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900

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