(22 nodes) Bacterial extracellular solute-binding protein network (Roseobacter denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	aglE	Alpha-glucoside transporter, periplasmic binding protein AglE. (450 aa)
	RD1_1729	Sugar ABC transporter, periplasmic sugar-binding protein. (418 aa)
	RD1_1489	Possible trehalose/maltose binding. (490 aa)
	RD1_1486	Periplasmic sorbitol-binding protein, putative. (435 aa)
	RD1_2369	Spermidine/putrescine ABC transporter, periplasmic binding protein, putative. (379 aa)
	RD1_4134	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (344 aa)
	potD-2	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (342 aa)
	RD1_4122	Sugar ABC transporter, periplasmic sugar-binding protein, putative. (577 aa)
	RD1_3953	Sugar ABC transporter, substrate-binding domain, putative. (406 aa)
	RD1_3883	ABC transporter, periplasmic substrate-binding protein, putative. (486 aa)
	RD1_3865	Polyamine ABC transporter, periplasmic binding protein, putative. (346 aa)
	RD1_3720	Sugar ABC transporter, periplasmic binding protein, putative. (442 aa)
	RD1_3640	Sugar ABC transporter, substrate-binding, putative. (481 aa)
	RD1_3621	ABC transporter, substrate-binding protein, putative. (473 aa)
	RD1_3571	Glycerol-3-phosphate ABC transporter, periplasmic binding protein. (422 aa)
	upgB	Glycerol-3-phosphate-binding periplasmic protein precursor, putative. (431 aa)
	RD1_2862	ABC transporter, substrate-binding protein, putative. (419 aa)
	RD1_2428	ABC transporter, substrate-binding protein, putative. (343 aa)
	RD1_0521	Putative sugar ABC transporter, periplasmic sugar-binding protein. (416 aa)
	potF	Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (360 aa)
	RD1_0175	ABC transporter, substrate-binding protein, putative. (368 aa)
	potD	Spermidine/putrescine-binding periplasmic protein, putative. (368 aa)

Your Current Organism:

Roseobacter denitrificans

NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RD1_1486	RD1_3621	RD1_1486	RD1_3621	Periplasmic sorbitol-binding protein, putative.	ABC transporter, substrate-binding protein, putative.	0.490
RD1_2369	RD1_4134	RD1_2369	RD1_4134	Spermidine/putrescine ABC transporter, periplasmic binding protein, putative.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.939
RD1_2369	potD	RD1_2369	RD1_0280	Spermidine/putrescine ABC transporter, periplasmic binding protein, putative.	Spermidine/putrescine-binding periplasmic protein, putative.	0.906
RD1_2369	potD-2	RD1_2369	RD1_4128	Spermidine/putrescine ABC transporter, periplasmic binding protein, putative.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.947
RD1_3571	upgB	RD1_3571	RD1_2939	Glycerol-3-phosphate ABC transporter, periplasmic binding protein.	Glycerol-3-phosphate-binding periplasmic protein precursor, putative.	0.923
RD1_3621	RD1_1486	RD1_3621	RD1_1486	ABC transporter, substrate-binding protein, putative.	Periplasmic sorbitol-binding protein, putative.	0.490
RD1_3621	RD1_3640	RD1_3621	RD1_3640	ABC transporter, substrate-binding protein, putative.	Sugar ABC transporter, substrate-binding, putative.	0.773
RD1_3621	RD1_3883	RD1_3621	RD1_3883	ABC transporter, substrate-binding protein, putative.	ABC transporter, periplasmic substrate-binding protein, putative.	0.719
RD1_3640	RD1_3621	RD1_3640	RD1_3621	Sugar ABC transporter, substrate-binding, putative.	ABC transporter, substrate-binding protein, putative.	0.773
RD1_3640	RD1_3883	RD1_3640	RD1_3883	Sugar ABC transporter, substrate-binding, putative.	ABC transporter, periplasmic substrate-binding protein, putative.	0.646
RD1_3883	RD1_3621	RD1_3883	RD1_3621	ABC transporter, periplasmic substrate-binding protein, putative.	ABC transporter, substrate-binding protein, putative.	0.719
RD1_3883	RD1_3640	RD1_3883	RD1_3640	ABC transporter, periplasmic substrate-binding protein, putative.	Sugar ABC transporter, substrate-binding, putative.	0.646
RD1_4134	RD1_2369	RD1_4134	RD1_2369	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Spermidine/putrescine ABC transporter, periplasmic binding protein, putative.	0.939
RD1_4134	potD	RD1_4134	RD1_0280	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Spermidine/putrescine-binding periplasmic protein, putative.	0.966
RD1_4134	potD-2	RD1_4134	RD1_4128	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.940
potD	RD1_2369	RD1_0280	RD1_2369	Spermidine/putrescine-binding periplasmic protein, putative.	Spermidine/putrescine ABC transporter, periplasmic binding protein, putative.	0.906
potD	RD1_4134	RD1_0280	RD1_4134	Spermidine/putrescine-binding periplasmic protein, putative.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.966
potD	potD-2	RD1_0280	RD1_4128	Spermidine/putrescine-binding periplasmic protein, putative.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.926
potD-2	RD1_2369	RD1_4128	RD1_2369	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Spermidine/putrescine ABC transporter, periplasmic binding protein, putative.	0.947
potD-2	RD1_4134	RD1_4128	RD1_4134	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.940

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