(14 nodes) ABC transporter type 1, transmembrane domain network (Roseobacter denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Others

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co-expression

protein homology

Your Input:
	RD1_1749	Efflux ABC transporter, transmembrane ATP-binding protein, putative. (617 aa)
	spaT	Subtilin transport ATP-binding protein, putative. (607 aa)
	RD1_3726	Toxin secretion ABC transporter, ATP binding component, putative. (696 aa)
	RD1_3725	Toxin secretion ABC transporter, ATP binding protein, putative. (575 aa)
	RD1_3050	ABC transporter, permease protein, putative. (1006 aa)
	RD1_1973	ABC transporter, ATP-binding protein, putative. (641 aa)
	RD1_1775	ABC transporter, ATP-binding protein, putative. (612 aa)
	prsD	Type I secretion system ATPase. (576 aa)
	RD1_1124	Toxin secretion ABC transporter, ATP-binding component, putative. (756 aa)
	RD1_0594	ABC transporter, ATP-binding permease protein, putative. (552 aa)
	RD1_0593	Putative cyclosin secreting ABC transporter, ATP binding protein. (745 aa)
	RD1_0408	ABC transporter, transmembrane ATP-binding protein. (612 aa)
	RD1_0407	ABC transporter, transmembrane ATP-binding protein. (610 aa)
	RD1_0331	ABC transporter subunit, putative. (980 aa)

Your Current Organism:

Roseobacter denitrificans

NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RD1_0331	RD1_1775	RD1_0331	RD1_1775	ABC transporter subunit, putative.	ABC transporter, ATP-binding protein, putative.	0.435
RD1_0407	RD1_0408	RD1_0407	RD1_0408	ABC transporter, transmembrane ATP-binding protein.	ABC transporter, transmembrane ATP-binding protein.	0.789
RD1_0407	RD1_1775	RD1_0407	RD1_1775	ABC transporter, transmembrane ATP-binding protein.	ABC transporter, ATP-binding protein, putative.	0.513
RD1_0408	RD1_0407	RD1_0408	RD1_0407	ABC transporter, transmembrane ATP-binding protein.	ABC transporter, transmembrane ATP-binding protein.	0.789
RD1_0408	RD1_1775	RD1_0408	RD1_1775	ABC transporter, transmembrane ATP-binding protein.	ABC transporter, ATP-binding protein, putative.	0.507
RD1_0593	RD1_0594	RD1_0593	RD1_0594	Putative cyclosin secreting ABC transporter, ATP binding protein.	ABC transporter, ATP-binding permease protein, putative.	0.839
RD1_0594	RD1_0593	RD1_0594	RD1_0593	ABC transporter, ATP-binding permease protein, putative.	Putative cyclosin secreting ABC transporter, ATP binding protein.	0.839
RD1_1749	RD1_1775	RD1_1749	RD1_1775	Efflux ABC transporter, transmembrane ATP-binding protein, putative.	ABC transporter, ATP-binding protein, putative.	0.495
RD1_1775	RD1_0331	RD1_1775	RD1_0331	ABC transporter, ATP-binding protein, putative.	ABC transporter subunit, putative.	0.435
RD1_1775	RD1_0407	RD1_1775	RD1_0407	ABC transporter, ATP-binding protein, putative.	ABC transporter, transmembrane ATP-binding protein.	0.513
RD1_1775	RD1_0408	RD1_1775	RD1_0408	ABC transporter, ATP-binding protein, putative.	ABC transporter, transmembrane ATP-binding protein.	0.507
RD1_1775	RD1_1749	RD1_1775	RD1_1749	ABC transporter, ATP-binding protein, putative.	Efflux ABC transporter, transmembrane ATP-binding protein, putative.	0.495
RD1_1775	RD1_1973	RD1_1775	RD1_1973	ABC transporter, ATP-binding protein, putative.	ABC transporter, ATP-binding protein, putative.	0.527
RD1_1775	RD1_3050	RD1_1775	RD1_3050	ABC transporter, ATP-binding protein, putative.	ABC transporter, permease protein, putative.	0.459
RD1_1775	spaT	RD1_1775	RD1_3852	ABC transporter, ATP-binding protein, putative.	Subtilin transport ATP-binding protein, putative.	0.470
RD1_1973	RD1_1775	RD1_1973	RD1_1775	ABC transporter, ATP-binding protein, putative.	ABC transporter, ATP-binding protein, putative.	0.527
RD1_3050	RD1_1775	RD1_3050	RD1_1775	ABC transporter, permease protein, putative.	ABC transporter, ATP-binding protein, putative.	0.459
RD1_3725	RD1_3726	RD1_3725	RD1_3726	Toxin secretion ABC transporter, ATP binding protein, putative.	Toxin secretion ABC transporter, ATP binding component, putative.	0.840
RD1_3726	RD1_3725	RD1_3726	RD1_3725	Toxin secretion ABC transporter, ATP binding component, putative.	Toxin secretion ABC transporter, ATP binding protein, putative.	0.840
spaT	RD1_1775	RD1_3852	RD1_1775	Subtilin transport ATP-binding protein, putative.	ABC transporter, ATP-binding protein, putative.	0.470

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