(28 nodes) Periplasmic binding protein-like I network (Roseobacter denitrificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RD1_0234	Transcriptional regulator, LacI family, putative. (385 aa)
	RD1_0488	Putative sugar ABC transporter, periplasmic sugar-binding protein. (308 aa)
	RD1_0490	Transcriptional regulator, LacI family, putative. (332 aa)
	RD1_0540	ABC transporter substrate binding protei. (376 aa)
	RD1_0631	ABC transporter, periplasmic substrate-binding protein, putative. (433 aa)
	RD1_0708	Conserved hypothetical protein. (427 aa)
	RD1_0854	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein. (395 aa)
	RD1_0864	Ribose ABC transporter, periplasmic binding component, putative. (378 aa)
	RD1_0898	Conserved hypothetical protein. (390 aa)
	RD1_1189	Conserved hypothetical protein. (389 aa)
	RD1_1487	Transcriptional regulator, lacI family, putative. (343 aa)
	RD1_1502	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (383 aa)
	RD1_1647	Putative sugar ABC transporter, periplasmic sugar-binding protein. (331 aa)
	RD1_2166	ABC transporter, substrate-binding protein, putative. (447 aa)
	RD1_2213	Sugar ABC transporter protein, putative. (338 aa)
	RD1_2320	Transcriptional regulator, putative. (342 aa)
	RD1_2380	Sugar ABC transporter, substrate-binding protein, putative. (346 aa)
	RD1_2631	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein. (396 aa)
	RD1_2843	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (450 aa)
	RD1_2923	Transcriptional regulator, LacI family, putative. (345 aa)
	RD1_3080	Sugar ABC transporter, ATP binding protein, putative. (330 aa)
	RD1_3591	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative. (389 aa)
	RD1_3596	ABC transporter, substrate-binding protein, putative. (423 aa)
	torT	Periplasmic protein TorT. (336 aa)
	RD1_3722	Transcriptional regulator, LacI family, putative. (346 aa)
	RD1_3807	Transcriptional regulator, LacI family, putative. (340 aa)
	RD1_3887	Transcriptional regulator protein, putative. (340 aa)
	RD1_3944	Transcriptional regulatory protein, LacI family, putative. (338 aa)

Your Current Organism:

Roseobacter denitrificans

NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RD1_0488	RD1_0490	Putative sugar ABC transporter, periplasmic sugar-binding protein.	Transcriptional regulator, LacI family, putative.	0.648
RD1_0488	RD1_2213	Putative sugar ABC transporter, periplasmic sugar-binding protein.	Sugar ABC transporter protein, putative.	0.447
RD1_0490	RD1_0488	Transcriptional regulator, LacI family, putative.	Putative sugar ABC transporter, periplasmic sugar-binding protein.	0.648
RD1_0540	RD1_0631	ABC transporter substrate binding protei.	ABC transporter, periplasmic substrate-binding protein, putative.	0.900
RD1_0540	RD1_0708	ABC transporter substrate binding protei.	Conserved hypothetical protein.	0.900
RD1_0540	RD1_0854	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0540	RD1_1502	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0540	RD1_2631	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0540	RD1_2843	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0540	RD1_3591	ABC transporter substrate binding protei.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0631	RD1_0540	ABC transporter, periplasmic substrate-binding protein, putative.	ABC transporter substrate binding protei.	0.900
RD1_0631	RD1_0708	ABC transporter, periplasmic substrate-binding protein, putative.	Conserved hypothetical protein.	0.900
RD1_0631	RD1_0854	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0631	RD1_1502	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0631	RD1_2631	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900
RD1_0631	RD1_2843	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0631	RD1_3591	ABC transporter, periplasmic substrate-binding protein, putative.	Branched-chain amino acid ABC transporter, periplasmic binding protein, putative.	0.900
RD1_0708	RD1_0540	Conserved hypothetical protein.	ABC transporter substrate binding protei.	0.900
RD1_0708	RD1_0631	Conserved hypothetical protein.	ABC transporter, periplasmic substrate-binding protein, putative.	0.900
RD1_0708	RD1_0854	Conserved hypothetical protein.	Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.	0.900

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