STRINGSTRING
RD1_0541 RD1_0541 RD1_0542 RD1_0542 RD1_0704 RD1_0704 RD1_0706 RD1_0706 RD1_0855 RD1_0855 RD1_0856 RD1_0856 RD1_0866 RD1_0866 rbsC rbsC RD1_1504 RD1_1504 RD1_1505 RD1_1505 RD1_1643 RD1_1643 RD1_1644 RD1_1644 RD1_0487 RD1_0487 RD1_2164 RD1_2164 RD1_2165 RD1_2165 rbcS rbcS rbsC-2 rbsC-2 RD1_2626 RD1_2626 RD1_2627 RD1_2627 RD1_2844 RD1_2844 RD1_2845 RD1_2845 RD1_3077 RD1_3077 rbsC-3 rbsC-3 RD1_3589 RD1_3589 RD1_3590 RD1_3590 RD1_3598 RD1_3598 RD1_3599 RD1_3599 RD1_4072 RD1_4072 RD1_4073 RD1_4073
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD1_0541Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (306 aa)
RD1_0542Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
RD1_0704Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (329 aa)
RD1_0706Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (358 aa)
RD1_0855Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (289 aa)
RD1_0856Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (325 aa)
RD1_0866Ribose ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (351 aa)
rbsCRibose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
RD1_1504Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (298 aa)
RD1_1505Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (341 aa)
RD1_1643Putative sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (322 aa)
RD1_1644Putative sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (364 aa)
RD1_0487Sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (366 aa)
RD1_2164Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (418 aa)
RD1_2165Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (669 aa)
rbcSRibose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (353 aa)
rbsC-2Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (336 aa)
RD1_2626Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (438 aa)
RD1_2627Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (336 aa)
RD1_2844Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (343 aa)
RD1_2845Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (399 aa)
RD1_3077Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (333 aa)
rbsC-3Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (320 aa)
RD1_3589Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (304 aa)
RD1_3590Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (342 aa)
RD1_3598Branched-chain amino acid transport system permease component, putative; Belongs to the binding-protein-dependent transport system permease family. (308 aa)
RD1_3599Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (377 aa)
RD1_4072Sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (360 aa)
RD1_4073Sugar ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (306 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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