STRINGSTRING
potF potF RD1_0175 RD1_0175 potD potD RD1_1486 RD1_1486 RD1_1489 RD1_1489 RD1_1729 RD1_1729 RD1_2369 RD1_2369 RD1_2416 RD1_2416 RD1_2428 RD1_2428 RD1_2862 RD1_2862 upgB upgB RD1_3571 RD1_3571 RD1_3621 RD1_3621 RD1_3720 RD1_3720 RD1_3865 RD1_3865 RD1_3883 RD1_3883 RD1_3953 RD1_3953
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
potFPutrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (360 aa)
RD1_0175ABC transporter, substrate-binding protein, putative. (368 aa)
potDSpermidine/putrescine-binding periplasmic protein, putative. (368 aa)
RD1_1486Periplasmic sorbitol-binding protein, putative. (435 aa)
RD1_1489Possible trehalose/maltose binding. (490 aa)
RD1_1729Sugar ABC transporter, periplasmic sugar-binding protein. (418 aa)
RD1_2369Spermidine/putrescine ABC transporter, periplasmic binding protein, putative. (379 aa)
RD1_2416Extracellular solute-binding protein, putative. (349 aa)
RD1_2428ABC transporter, substrate-binding protein, putative. (343 aa)
RD1_2862ABC transporter, substrate-binding protein, putative. (419 aa)
upgBGlycerol-3-phosphate-binding periplasmic protein precursor, putative. (431 aa)
RD1_3571Glycerol-3-phosphate ABC transporter, periplasmic binding protein. (422 aa)
RD1_3621ABC transporter, substrate-binding protein, putative. (473 aa)
RD1_3720Sugar ABC transporter, periplasmic binding protein, putative. (442 aa)
RD1_3865Polyamine ABC transporter, periplasmic binding protein, putative. (346 aa)
RD1_3883ABC transporter, periplasmic substrate-binding protein, putative. (486 aa)
RD1_3953Sugar ABC transporter, substrate-binding domain, putative. (406 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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