STRINGSTRING
RD1_0592 RD1_0592 RD1_0759 RD1_0759 RD1_1342 RD1_1342 RD1_1588 RD1_1588 RD1_1721 RD1_1721 RD1_1779 RD1_1779 RD1_2207 RD1_2207 acrE acrE pdhB-2 pdhB-2 pyc pyc RD1_3484 RD1_3484 RD1_3593 RD1_3593
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD1_0592Putative HlyD family secretion protein. (453 aa)
RD1_0759RND efflux membrane fusion protein, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (333 aa)
RD1_1342Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (375 aa)
RD1_1588RND efflux membrane fusion protein, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (409 aa)
RD1_1721Type I secretion membrane fusion protein, HlyD family, putative. (437 aa)
RD1_1779Conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (412 aa)
RD1_2207HlyD_D23 domain-containing protein; Cation efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (379 aa)
acrERND efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (388 aa)
pdhB-2Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (459 aa)
pycPyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1146 aa)
RD1_3484Multidrug resistance efflux pump, putative. (411 aa)
RD1_3593Multidrug resistance efflux pump, putative. (358 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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