Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RD1_2010 | RD1_2751 | RD1_2010 | RD1_2751 | 5-formyltetrahydrofolate cyclo-ligase, putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 3-hydroxyisobutyrate dehydrogenase, putative. | 0.660 |
| RD1_2010 | garR-2 | RD1_2010 | RD1_2540 | 5-formyltetrahydrofolate cyclo-ligase, putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 2-hydroxy-3-oxopropionate reductase, putative. | 0.660 |
| RD1_2010 | mmsB | RD1_2010 | RD1_2991 | 5-formyltetrahydrofolate cyclo-ligase, putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. | 0.667 |
| RD1_2010 | surA | RD1_2010 | RD1_3122 | 5-formyltetrahydrofolate cyclo-ligase, putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Peptidyl-prolyl cis-trans isomerase SurA, putative. | 0.426 |
| RD1_2751 | RD1_2010 | RD1_2751 | RD1_2010 | 3-hydroxyisobutyrate dehydrogenase, putative. | 5-formyltetrahydrofolate cyclo-ligase, putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 0.660 |
| RD1_2751 | garR-2 | RD1_2751 | RD1_2540 | 3-hydroxyisobutyrate dehydrogenase, putative. | 2-hydroxy-3-oxopropionate reductase, putative. | 0.927 |
| cheA | cheW | RD1_3059 | RD1_3060 | Chemotaxis protein CheA. | Chemotaxis protein CheW. | 0.999 |
| cheA | flgK | RD1_3059 | RD1_0580 | Chemotaxis protein CheA. | Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. | 0.910 |
| cheA | fliF | RD1_3059 | RD1_0268 | Chemotaxis protein CheA. | Flagellar M-ring protein FliF, putative; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.850 |
| cheW | cheA | RD1_3060 | RD1_3059 | Chemotaxis protein CheW. | Chemotaxis protein CheA. | 0.999 |
| cheW | flgK | RD1_3060 | RD1_0580 | Chemotaxis protein CheW. | Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. | 0.856 |
| cheW | fliF | RD1_3060 | RD1_0268 | Chemotaxis protein CheW. | Flagellar M-ring protein FliF, putative; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.740 |
| dnaJ | dnaK | RD1_0379 | RD1_0378 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Chaperone protein DnaK, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.999 |
| dnaJ | radA | RD1_0379 | RD1_3245 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.638 |
| dnaJ | recA | RD1_0379 | RD1_2710 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.439 |
| dnaJ | recN | RD1_0379 | RD1_3344 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.646 |
| dnaJ | surA | RD1_0379 | RD1_3122 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Peptidyl-prolyl cis-trans isomerase SurA, putative. | 0.702 |
| dnaK | dnaJ | RD1_0378 | RD1_0379 | Chaperone protein DnaK, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.999 |
| dnaK | radA | RD1_0378 | RD1_3245 | Chaperone protein DnaK, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.564 |
| dnaK | recA | RD1_0378 | RD1_2710 | Chaperone protein DnaK, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.697 |
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