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| | soxA | Sarcosine oxidase, alpha subunit; Belongs to the GcvT family. (983 aa) |
| | soxD | Sarcosine oxidase, delta subunit. (95 aa) |
| | soxB | Sarcosine oxidase, beta subunit. (416 aa) |
| | RD1_0025 | Thiolase, N-terminal domain; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa) |
| | gltB | Glutamate synthase, large subunit. (1509 aa) |
| | gltD | Glutamate synthase, small subunit. (477 aa) |
| | dld | D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family. (573 aa) |
| | dapE | Succinyl-diaminopimelate desuccinylase. (429 aa) |
| | dapE-2 | Putative succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (381 aa) |
| | dapD | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. (275 aa) |
| | serB | Phosphoserine phosphatase, putative. (291 aa) |
| | serC | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (387 aa) |
| | serA | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (531 aa) |
| | bktB | Beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa) |
| | idhA | Myo-inositol dehydrogenase. (331 aa) |
| | fba | Fructose-bisphosphate aldolase, putative. (282 aa) |
| | RD1_0219 | Conserved hypothetical protein. (280 aa) |
| | RD1_0220 | pfkB family kinase, putative. (324 aa) |
| | iolD | Acetolactate synthase; Belongs to the TPP enzyme family. (621 aa) |
| | RD1_0223 | Conserved hypothetical protein. (298 aa) |
| | RD1_0284 | Oxidoreductase, putative. (479 aa) |
| | bphF | 4-hydroxy-2-oxovalerate aldolase; Belongs to the HpcH/HpaI aldolase family. (256 aa) |
| | asd | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (340 aa) |
| | fghA | S-formylglutathione hydrolase, putative; Serine hydrolase involved in the detoxification of formaldehyde. (276 aa) |
| | RD1_0322 | Hydrolase, putative. (210 aa) |
| | accD | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (314 aa) |
| | gpmI | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (505 aa) |
| | cysQ | 3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family. (266 aa) |
| | tme | NADP-dependent malic enzyme. (751 aa) |
| | hemD | uroporphyrinogen-III synthase, putative; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (234 aa) |
| | iolB | Myo-inositol catabolism protein IolB, putative. (270 aa) |
| | RD1_0506 | Oxidoreductase, putative. (338 aa) |
| | RD1_0507 | MaoC-like protein, putative. (148 aa) |
| | pct | Propionate CoA-transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family. (527 aa) |
| | glcD | Glycolate oxidase, subunit GlcD. (484 aa) |
| | glcE | Glycolate oxidase, subunit GlcE. (381 aa) |
| | glcF | Glycolate oxidase, iron-sulfur subunit. (441 aa) |
| | RD1_0632 | Flavin-containing monooxygenase. (466 aa) |
| | ald | Aldehyde dehydrogenase family protein, putative. (475 aa) |
| | dapB | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. (272 aa) |
| | ald-2 | Aldehyde dehydrogenase family protein, putative; Belongs to the aldehyde dehydrogenase family. (780 aa) |
| | kdgK | 2-dehydro-3-deoxygluconokinase. (293 aa) |
| | RD1_0673 | phytanoyl-CoA dioxygenase family protein. (292 aa) |
| | RD1_0685 | Oxidoreductase, putative. (253 aa) |
| | paaK | phenylacetate-CoA ligase, putative. (411 aa) |
| | dapA | Dihydrodipicolinate synthase, putative; Belongs to the DapA family. (289 aa) |
| | dapF | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (280 aa) |
| | pta | Phosphate acetyltransferase. (332 aa) |
| | gabT | 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (431 aa) |
| | hyuE | Hydantoin racemase. (227 aa) |
| | gnl | Gluconolactonase, putative. (305 aa) |
| | RD1_0884 | Conserved hypothetical protein. (270 aa) |
| | flhA-2 | Glutathione-dependent formaldehyde dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa) |
| | RD1_0888 | S-formylglutathione hydrolase, putative; Serine hydrolase involved in the detoxification of formaldehyde. (274 aa) |
| | moxF | Methanol dehydrogenase, large subunit. (600 aa) |
| | RD1_0894 | Conserved hypothetical protein. (270 aa) |
| | gabD | Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (492 aa) |
| | mst | 3-mercaptopyruvate sulfurtransferase. (284 aa) |
| | RD1_0947 | Pyridine nucleotide-disulphide oxidoreductase, putative. (402 aa) |
| | dapA-2 | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (291 aa) |
| | dmsC | Anaerobic dimethyl sulfoxide reductase, C subunit, putative. (290 aa) |
| | RD1_0974 | 4Fe-4S binding domain protein. (252 aa) |
| | phsA | Thiosulfate reductase, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (939 aa) |
| | accA | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (320 aa) |
| | citE | Citrate lyase, beta subunit, putative; Belongs to the HpcH/HpaI aldolase family. (318 aa) |
| | pyk | Pyruvate kinase; Belongs to the pyruvate kinase family. (482 aa) |
| | rpe | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (230 aa) |
| | acsA | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (640 aa) |
| | RD1_1128 | Conserved hypothetical protein. (280 aa) |
| | cysE | Serine acetyltransferase. (268 aa) |
| | RD1_1131 | Tautomerase, putative; Belongs to the 4-oxalocrotonate tautomerase family. (73 aa) |
| | mclA | malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (325 aa) |
| | mtkA | malate-CoA ligase, beta subunit, putative; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (399 aa) |
| | mtkB | Malate-CoA ligase, alpha subunit, putative; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (295 aa) |
| | gyaR | Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (323 aa) |
| | glyA | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (429 aa) |
| | RD1_1179 | Conserved hypothetical protein. (134 aa) |
| | RD1_1204 | 2-hydroxyacid dehydrogenase, putative. (310 aa) |
| | gltX | glutamyl-tRNA synthetase, putative; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (441 aa) |
| | hemC | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. (314 aa) |
| | RD1_1344 | Trimethylamine methyltransferase, putative; Belongs to the trimethylamine methyltransferase family. (513 aa) |
| | RD1_1348 | Fumarylacetoacetate hydrolase, putative. (227 aa) |
| | ibd2 | isobutyryl-CoA dehydrogenase. (561 aa) |
| | pckA | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (532 aa) |
| | bhbD | 3-hydroxybutyryl-CoA dehydrogenase. (291 aa) |
| | RD1_1495 | Tryptophan monooxygenase, putative. (549 aa) |
| | RD1_1496 | Hydrolase, putative. (261 aa) |
| | RD1_1497 | Glutamine synthetase, putative. (435 aa) |
| | soxX | Monoheme cytochrome c SoxX. (157 aa) |
| | soxY | Sulfur oxidation Y protein. (138 aa) |
| | soxZ | Sulfur oxidation Z protein. (110 aa) |
| | soxA-2 | Diheme cytochrome c SoxA. (281 aa) |
| | soxB-2 | Sulfur oxidation B protein; Belongs to the 5'-nucleotidase family. (567 aa) |
| | soxC | Sulfite dehydrogenase SoxC protein. (428 aa) |
| | soxD-2 | Diheme cytochrome c SoxD. (345 aa) |
| | RD1_1529 | Amidohydrolase family protein. (393 aa) |
| | RD1_1534 | Conserved hypothetical protein. (496 aa) |
| | nosZ | Nitrous-oxide reductase. (637 aa) |
| | norB | Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. (456 aa) |
| | norC | NorC-like protein. (150 aa) |
| | nirS | Nitrite reductase. (565 aa) |
| | nirE | uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (263 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (421 aa) |
| | lpdA | Dihydrolipoamide dehydrogenase. (462 aa) |
| | sucB | Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (498 aa) |
| | sucA | Alpha-ketoglutarate dehydrogenase. (986 aa) |
| | sucD | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (295 aa) |
| | sucC | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (397 aa) |
| | mdh | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (320 aa) |
| | citE-2 | Citrate lyase, beta subunit, putative; Belongs to the HpcH/HpaI aldolase family. (285 aa) |
| | RD1_1623 | MaoC family protein. (344 aa) |
| | sdhC | Succinate dehydrogenase, cytochrome b556 subunit. (127 aa) |
| | sdhD | Suc. (123 aa) |
| | sdhA | Succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (601 aa) |
| | sdhB | Succinate dehydrogenase, iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa) |
| | mutB | methylmalonyl-CoA mutase. (655 aa) |
| | ccrA | crotonyl-CoA reductase, putative. (426 aa) |
| | argD | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (391 aa) |
| | sgaA | Serine--glyoxylate aminotransferase, putative. (410 aa) |
| | metF | 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (289 aa) |
| | gill | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (477 aa) |
| | soxB-4 | Sarcosine oxidase, beta subunit. (417 aa) |
| | soxD-4 | Sarcosine oxidase, delta subunit. (89 aa) |
| | soxA-4 | Sarcosine oxidase, alpha subunit; Belongs to the GcvT family. (975 aa) |
| | RD1_1892 | Glutamine synthetase, putative. (452 aa) |
| | RD1_1894 | Glutamine synthetase, putative. (444 aa) |
| | nthA | Nitrile hydratase, alpha subunit. (210 aa) |
| | nthB | Nitrile hydratase, beta subunit; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family. (224 aa) |
| | rpiA | Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (262 aa) |
| | ppdK | Pyruvate, phosphate dikinase. (845 aa) |
| | ttuD | Hydroxypyruvate reductase. (347 aa) |
| | pccB | propionyl-CoA carboxylase, beta subunit; This is one of the 2 subunits of the biotin-dependent propionyl-CoA carboxylase (PCC), the enzyme catalyzing the carboxylation of propionyl-CoA/propanoyl-CoA to D-methylmalonyl- CoA/(S)-methylmalonyl-CoA. Within the holoenzyme, the alpha subunit catalyzes the ATP-dependent carboxylation of the biotin carried by the biotin carboxyl carrier (BCC) domain, while the beta subunit then tranfers the carboxyl group from carboxylated biotin to propionyl-CoA (Probable); Belongs to the AccD/PCCB family. (510 aa) |
| | pccA | propionyl-CoA carboxylase, alpha subunit. (681 aa) |
| | mutA | methylmalonyl-CoA mutase. (709 aa) |
| | RD1_2049 | malate/L-lactate dehydrogenase, putative; Belongs to the LDH2/MDH2 oxidoreductase family. (331 aa) |
| | tal | Transaldolase, putative; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (217 aa) |
| | folD | FolD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (300 aa) |
| | thrC | Threonine synthase. (460 aa) |
| | RD1_2157 | Aspartate kinase; Belongs to the aspartokinase family. (412 aa) |
| | ipuC | Gamma-glutamylisopropylamide synthetase, putative; Belongs to the glutamine synthetase family. (454 aa) |
| | icd | Isocitrate dehydrogenase, NADP-dependent; Belongs to the monomeric-type IDH family. (740 aa) |
| | fda | Fructose-bisphosphate aldolase, class I. (290 aa) |
| | fumC | Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (463 aa) |
| | cysB | Cysteine synthase. (345 aa) |
| | RD1_2308 | Oxidoreductase, putative. (366 aa) |
| | acsA-2 | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (656 aa) |
| | pobA | P-hydroxybenzoate hydroxylase. (391 aa) |
| | RD1_2337 | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (452 aa) |
| | gap | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (332 aa) |
| | RD1_2421 | Polysaccharide deacetylase family protein, putative. (315 aa) |
| | narG | Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1246 aa) |
| | narH | Nitrate reductase, beta subunit. (506 aa) |
| | narI | Nitrate reductase, gamma subunit. (264 aa) |
| | gdhA | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (449 aa) |
| | RD1_2530 | Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family. (520 aa) |
| | glpX | Fructose-1,6-bisphosphatase, class II. (324 aa) |
| | hom | Homoserine dehydrogenase. (428 aa) |
| | acnA | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (895 aa) |
| | glnA | Glutamine synthetase, type I. (467 aa) |
| | icd-2 | Isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (404 aa) |
| | pgi | Glucose-6-phosphate isomerase. (530 aa) |
| | pgl | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (223 aa) |
| | zwf | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (487 aa) |
| | hemB | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (332 aa) |
| | RD1_2777 | Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family. (527 aa) |
| | RD1_2791 | Monooxygenase, putative. (386 aa) |
| | dehH1 | Haloacetate dehalogenase H-1, putative. (290 aa) |
| | accB | acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (160 aa) |
| | accC | acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (450 aa) |
| | pgm | Phosphoglucomutase. (543 aa) |
| | eda | KHG/KDPG aldolase. (213 aa) |
| | edd | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (601 aa) |
| | gap-2 | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (335 aa) |
| | sgaA-2 | Serine--glyoxylate aminotransferase. (396 aa) |
| | fdhI | Formate dehydrogenase, gamma subunit, putative. (396 aa) |
| | fdhB | Formate dehydrogenase Fe-S subunit. (198 aa) |
| | fdhA | Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (960 aa) |
| | cysK | O-acetylserine sulfhydrylase. (359 aa) |
| | tpiA | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (248 aa) |
| | cysG | Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family. (475 aa) |
| | cysI | Sulfite reductase. (554 aa) |
| | cysH | Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (253 aa) |
| | tktA | Transketolase; Belongs to the transketolase family. (681 aa) |
| | gap-3 | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (332 aa) |
| | lpdA-2 | Dihydrolipoamide dehydrogenase. (464 aa) |
| | pgk | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (395 aa) |
| | pdhA | Pyruvate dehydrogenase complex, E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (336 aa) |
| | pdhB-2 | Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (459 aa) |
| | pdhC | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (431 aa) |
| | cysE-2 | Serine acetyltransferase. (273 aa) |
| | metF-2 | 5,10-methylenetetrahydrofolate reductase, putative. (327 aa) |
| | RD1_3084 | Conserved hypothetical protein. (424 aa) |
| | galM | Aldose 1-epimerase, putative. (322 aa) |
| | eno | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (424 aa) |
| | RD1_3188 | Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family. (512 aa) |
| | pdxH | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (201 aa) |
| | gltX-2 | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (466 aa) |
| | gltA | Citrate synthase; Belongs to the citrate synthase family. (431 aa) |
| | paaB | enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa) |
| | RD1_3274 | Carboxymuconolactone decarboxylase. (138 aa) |
| | glcB | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (715 aa) |
| | pyc | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1146 aa) |
| | phbA | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (406 aa) |
| | phbB | acetoacetyl-CoA reductase, putative. (240 aa) |
| | ectC | Ectoine synthase, putative. (128 aa) |
| | gyaR-2 | Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (328 aa) |
| | RD1_3471 | Asp/Glu/Hydantoin racemase family protein, putative. (265 aa) |
| | RD1_3474 | Peptidase, M24 family protein, putative. (391 aa) |
| | RD1_3475 | Conserved hypothetical protein. (331 aa) |
| | RD1_3495 | D-isomer specific 2-hydroxyacid dehydrogenase family protein. (317 aa) |
| | RD1_3522 | MaoC-like protein, putative. (147 aa) |
| | ltaE | Low-specificity L-threonine aldolase. (345 aa) |
| | prs | Ribose-phosphate pyrophosphokinase putative; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (339 aa) |
| | fucA | L-fuculose phosphate aldolase. (217 aa) |
| | serA-2 | D-3-phosphoglycerate dehydrogenase, putative; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (346 aa) |
| | hmgA | Homogentisate 1,2-dioxygenase. (449 aa) |
| | maiA | Maleylacetoacetate isomerase. (211 aa) |
| | fahA | Fumarylacetoacetase. (416 aa) |
| | dmsA | Dimethyl sulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (890 aa) |
| | RD1_3670 | Pyridine nucleotide-disulfide oxidoreductase, putative. (485 aa) |
| | RD1_3674 | Pyridoxal-phosphate dependent enzyme. (347 aa) |
| | gnl-2 | Gluconolactonase, putative. (310 aa) |
| | RD1_3762 | Oxidoreductase, putative. (342 aa) |
| | RD1_3763 | Conserved hypothetical protein. (280 aa) |
| | xylA-2 | Xylose isomerase, putative. (328 aa) |
| | pcaC | 4-carboxymuconolactone decarboxylase. (127 aa) |
| | pcaH | Protocatechuate 3,4-dioxygenase, beta subunit. (240 aa) |
| | pcaG | Protocatechuate 3,4-dioxygenase, alpha subunit. (195 aa) |
| | glk | Glucokinase, putative; Belongs to the bacterial glucokinase family. (315 aa) |
| | ureA | Urease gamma subunit; Belongs to the urease gamma subunit family. (100 aa) |
| | ureB | Urease beta subunit; Belongs to the urease beta subunit family. (101 aa) |
| | ureC | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (569 aa) |
| | flhA-3 | Glutathione-dependent formaldehyde dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa) |
| | RD1_3812 | Decarboxylase, putative. (168 aa) |
| | bcpC | 3-phosphonopyruvate decarboxylase, putative. (184 aa) |
| | lldD-2 | L-lactate dehydrogenase (Cytochrome), putative. (367 aa) |
| | cobA | uroporphyrin-III C-methyltransferase, putative. (239 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (383 aa) |
| | RD1_3872 | Oxidoreductase, putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (246 aa) |
| | deh | (S)-2-haloacid dehalogenase. (228 aa) |
| | pcaD | 3-oxoadipate enol-lactonase, putative. (267 aa) |
| | pcaB | 3-carboxy-cis,cis-muconate cycloisomerase, putative. (443 aa) |
| | gcdH | glutaryl-CoA dehydrogenase. (407 aa) |
| | fadA | Fatty acid oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa) |
| | fadJ | Fatty acid oxidation complex alpha subunit, putative. (732 aa) |
| | RD1_3988 | Coenzyme F420 hydrogenase, beta subunit, putative. (402 aa) |
| | glyA-2 | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (431 aa) |
| | xdhA | Xanthine dehydrogenase, A subunit. (457 aa) |
| | xdhB | Xanthine dehydrogenase, B subunit. (765 aa) |
| | tmd | Trimethylamine dehydrogenase. (468 aa) |
| | RD1_4150 | Conserved hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (117 aa) |
| | cysG-2 | Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. (465 aa) |
| | nasA | Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (858 aa) |
| | nirD-2 | Assimilatory nitrite reductase, small subunit. (111 aa) |
| | nirB | Assimilatory nitrite reductase, large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (808 aa) |
| | fdhB-2 | Formate dehydrogenase, beta subunit. (560 aa) |
| | fdhA-2 | Formate dehydrogenase, alpha subunit. (925 aa) |
| | fhs | Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (558 aa) |
| | folD-2 | FolD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (300 aa) |
| | folD-3 | FolD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (290 aa) |
| | RD1_4241 | Hydroxypyruvate reductase, putative. (425 aa) |
| | mclA-2 | malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (325 aa) |
| | RD1_4244 | Aminotransferase, putative. (413 aa) |
| | mtkA-2 | malate-CoA ligase, beta subunit, putative; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (399 aa) |
| | mtkB-2 | malate-CoA ligase, alpha subunit, putative; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (297 aa) |
| | gyaR-3 | Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (330 aa) |
| | ppc | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. (871 aa) |
| | RD1_4251 | Glutamate synthase family protein, putative; Belongs to the glutamate synthase family. (446 aa) |
| | RD1_4252 | FwdC/FmdC family protein. (227 aa) |
| | RD1_4253 | Glutamine amidotransferase, class II putative. (309 aa) |
